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WormBase Tree Display for Gene: WBGene00027063

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Name Class

WBGene00027063SMapS_parentSequencecb25.fpc0078
IdentityVersion3
NameCGC_nameCbr-phm-2From_analysisInferred_from_orthology
Sequence_nameCBG04377
Molecular_nameCBG04377
CBG04377.1
CBP47956
Other_nameCBG_04377Accession_evidenceNDBHE601388
Public_nameCBG04377
DB_infoDatabaseNDBlocus_tagCBG_04377
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
231 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270383
303 Mar 2017 00:18:26WBPerson4025EventAcquires_mergeWBGene00270383
428 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbr-phm-2
Acquires_mergeWBGene00270383
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classphm
Allele (15)
RNASeq_FPKMWBls:000000225.4372From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.5978From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
43.82From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.89375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
25.7668From_analysisRNASeq.briggsae.WBls:0000002.control_mean
26.7556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
27.1767From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003101.671From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
112.994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
90.3475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
102.724From_analysisRNASeq.briggsae.WBls:0000003.control_mean
104.83From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000434.3407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
35.84From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
37.3392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
29.9645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
36.4012From_analysisRNASeq.briggsae.WBls:0000004.control_mean
38.9092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
41.4526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.5947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.85157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.50771From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.07685From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
10.3358From_analysisRNASeq.briggsae.WBls:0000027.control_median
10.6868From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.2241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003518.3562From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.9097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
13.9059From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.1884From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.9022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
24.4081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.53373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004150.6295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
51.4594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
51.5906From_analysisRNASeq.briggsae.WBls:0000041.control_median
51.7219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
52.2528From_analysisRNASeq.briggsae.WBls:0000041.control_mean
55.2006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
32.0865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
48.6273From_analysisRNASeq.briggsae.WBls:0000041.control_mean
50.666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
51.0627From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006322.5743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.9918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.4981From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
25.7504From_analysisRNASeq.briggsae.WBls:0000063.control_mean
27.3444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
29.3432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.4212From_analysisRNASeq.briggsae.WBls:0000063.control_median
27.1905From_analysisRNASeq.briggsae.WBls:0000063.control_mean
34.3913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010123.9918From_analysisRNASeq.briggsae.total_over_all_stages.control_median
29.4354From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.05From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.3659From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130697
00130698
Contained_in_operonCBOPA0649
Ortholog (26)
ParalogWBGene00023974Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00024801Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027836Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027872Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035657Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00087396Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Is an ortholog of C. elegans phm-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04377
Corresponding_CDS_historyCBG04377:bp194
CBG04377:bp255
CBG04377:bp258
Corresponding_transcriptCBG04377.1
Other_sequenceCR09535
CRC04736_1
CRC11574_1
CRC05975_1
CR02243
CR06520
Experimental_infoExpr_patternExpr1056494
Microarray_resultsGPL8303_CB6_WBGene00027063_A
GPL8303_CB6_WBGene00027063_B
GPL14143_CBG04377_634-693_0.779_122_B
GPL14143_CBG04377_1395-1454_0.589_364_A
GPL14143_CBG04377_1702-1761_0.741_187_C
MethodGene