WormBase Tree Display for CDS: CBG05555a
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| CBG05555a | SMap | S_parent | Sequence | cb25.fpc0129 | |
|---|---|---|---|---|---|
| Structure | Source_exons (33) | ||||
| DB_info | Database | UniProt | UniProtAcc | A8X054 | |
| UniProtId | A8X054_CAEBR | ||||
| DB_remark | CBR-UNC-80 protein; contains similarity to Pfam domain PF15778 (UNC80 N-terminal); contains similarity to Interpro domains IPR031542 (Cation channel complex component UNC80, N-terminal), IPR016024 (Armadillo-type fold) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Artificial_intron | Low_quality_sequence | ||||
| Visible | Gene | WBGene00027983 | |||
| Corresponding_transcript | CBG05555a.1 | ||||
| Corresponding_protein | CBP41304 | ||||
| Corresponding_oligo_set (4) | |||||
| Matching_cDNA | briggsae_GG3244|c3_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG3244|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00027983_A | ||||
| GPL14143_CBG05555_10275-10334_0.939_4_C | |||||
| GPL14143_CBG05555_10507-10566_0.648_979_B | |||||
| GPL14143_CBG05555_10613-10672_0.966_1_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:23 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to F25C8.3 by best mutual match (eval=0) ; Ortholog F25C8.3 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01420 ; Gene WBGene00027983 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrV.briggsae.jigsaw.3848 | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG3244|c2_g2_i2-chrV-1b.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
