WormBase Tree Display for CDS: CBG24578a
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| CBG24578a | SMap | S_parent | Sequence | cb25.NA_193 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 147 | ||
| 3336 | 3517 | ||||
| 3588 | 3738 | ||||
| 3827 | 3934 | ||||
| 4782 | 5042 | ||||
| 5701 | 5971 | ||||
| 7127 | 7284 | ||||
| 7682 | 7758 | ||||
| 11802 | 12074 | ||||
| 13046 | 13145 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8WL06 | |
| UniProtId | UNC62_CAEBR | ||||
| DB_remark | CBR-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00042654 | |||
| Corresponding_transcript | CBG24578a.1 | ||||
| Corresponding_protein | CBP42144 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00042654_A | ||||
| GPL8303_CB6_WBGene00042654_B | |||||
| GPL14143_CBG24578_530-589_0.795_24_C | |||||
| GPL14143_CBG24578_2019-2078_0.834_13_B | |||||
| GPL14143_CBG24578_2266-2325_0.543_182_A | |||||
| Matching_cDNA | briggsae_GG2356|c5_g1_i7 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results (5) | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:21 | WBPerson4025 | |||
| Remark | [gffnote] Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP12952 ; Gene WBGene00042654 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrV_random.briggsae.jigsaw.15 | |||||
| modified internal exons based on elegans ortholog. [20090902 tb] | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG2356|c5_g1_i7-chrV-1'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
