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WormBase Tree Display for CDS: CBN01520

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Name Class

CBN01520SMapS_parentSequenceCbre_Contig35
StructureSource_exons1402
4501749
18561952
19972102
21502389
DB_infoDatabaseTREEFAMTREEFAM_IDTF101232
DB_remarkCBN-XPD-1 protein; contains similarity to Pfam domains PF06733 (DEAD_2), PF06777 (Helical and beta-bridge domain), PF13307 (Helicase C-terminal domain); contains similarity to Interpro domains IPR010614 (RAD3-like helicase, DEAD), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006554 (Helicase-like, DEXD box c2 type), IPR001945 (RAD3/XPD family), IPR006555 (ATP-dependent helicase, C-terminal), IPR013020 (ATP-dependent helicase Rad3/Chl1-like), IPR010643 (Helical and beta-bridge domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00140245
Corresponding_transcriptCBN01520.1
Corresponding_proteinCN27929
Corresponding_oligo_setGPL14142_CBN01520_1139-1198_0.895_21_C
GPL14142_CBN01520_1470-1529_0.880_28_B
GPL14142_CBN01520_1606-1665_0.923_7_A
Matching_cDNAFF083140Inferred_automaticallytranscript_builder.pl
FF083871Inferred_automaticallytranscript_builder.pl
FF103392Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN01520_1139-1198_0.895_21_C
GPL14142_CBN01520_1470-1529_0.880_28_B
GPL14142_CBN01520_1606-1665_0.923_7_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
13.2568From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
14.019From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
16.4917From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
17.0473From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
23.6688From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
24.0088From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
8.3928From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
8.60488From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
47.5974From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
20.3284From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
20.5153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
20.5466From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
23.3648From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
25.7721From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003819.4258From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
19.7399From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig8.brenneri.jigsaw.123.mRNA123
[20081113 db] corrected translation frame of this protein
Methodcurated