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WormBase Tree Display for CDS: CBN05473

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Name Class

CBN05473SMapS_parentSequenceCbre_Contig12
StructureSource_exons1160
214411
457659
712792
843913
9631074
11221205
13101402
14481621
16831793
DB_infoDatabaseTREEFAMTREEFAM_IDTF105795
DB_remarkCBN-CLPF-1 protein; contains similarity to Pfam domains PF06807 (Pre-mRNA cleavage complex II protein Clp1), PF16573 (N-terminal beta-sandwich domain of polyadenylation factor), PF16575 (mRNA cleavage and polyadenylation factor CLP1 P-loop); contains similarity to Interpro domains IPR010655 (Pre-mRNA cleavage complex subunit Clp1, C-terminal), IPR038239 (Clp1, N-terminal beta-sandwich domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR038238 (Clp1, C-terminal domain superfamily), IPR032324 (Clp1, N-terminal beta-sandwich domain), IPR032319 (Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00144198
Corresponding_transcriptCBN05473.1
Corresponding_proteinCN15404
Corresponding_oligo_setGPL14142_CBN05473_584-643_0.808_67_A
GPL14142_CBN05473_655-714_0.737_100_C
GPL14142_CBN05473_757-816_0.907_13_B
Matching_cDNAFF097822Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN05473_584-643_0.808_67_A
GPL14142_CBN05473_655-714_0.737_100_C
GPL14142_CBN05473_757-816_0.907_13_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
13.4246From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
13.8994From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
17.3088From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
18.8986From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
19.0471From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
19.5376From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
24.2322From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
7.22527From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
29.539From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
11.887From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
13.6979From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
15.0623From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
24.1248From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
24.3749From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003832.5241From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
34.286From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig67.brenneri.jigsaw.10.mRNA10
Methodcurated