WormBase Tree Display for CDS: CBN23423

CBN23423 SMap: S_parent: Sequence: Cbre_Contig716
  Structure: Source_exons: 1 380
      639 1014
      1254 1614
      2151 2475
      2742 2910
  DB_info: Database: TREEFAM TREEFAM_ID TF320703
    DB_remark: CBN-ARC-1.1 protein; contains similarity to Pfam domains PF00025 (ADP-ribosylation factor family), PF00643 (B-box zinc finger); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR005225 (Small GTP-binding protein domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR003649 (B-box, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR000315 (B-box-type zinc finger)
  Origin: From_laboratory: RW
    Species: Caenorhabditis brenneri
  Properties: Coding: CDS
      Prediction_status: Predicted
  Visible: Gene: WBGene00162148
    Corresponding_transcript: CBN23423.1
    Corresponding_protein: CN06945
    Corresponding_oligo_set: GPL14142_CBN23423_1212-1271_0.922_2_B
      GPL14142_CBN23423_1282-1341_0.940_1_A
      GPL14142_CBN23423_391-450_0.572_220_C
    Microarray_results: GPL14142_CBN23423_391-450_0.572_220_C
      GPL14142_CBN23423_1212-1271_0.922_2_B
      GPL14142_CBN23423_1282-1341_0.940_1_A
    RNASeq_FPKM: WBls:0000002 0.438987 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        1.58604 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        1.73128 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        1.76375 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        1.8869 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        2.261 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        6.56268 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        3.85189 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        1.49916 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        2.24588 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        2.38203 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        2.48961 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        3.56933 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 2.51127 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        3.79819 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (14)
    Remark: Contig1488.brenneri.jigsaw.1.mRNA1
  Method: curated