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WormBase Tree Display for CDS: CJA06788

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Name Class

CJA06788EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17503
StructureSource_exons1160
207329
8611357
DB_infoDatabaseTREEFAMTREEFAM_IDTF319497
DB_remarkCJP-PAX-1 protein; contains similarity to Pfam domain PF00292 ('Paired box' domain); contains similarity to Interpro domains IPR001523 (Paired domain), IPR043565 (PAX family), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00125992
Corresponding_transcriptCJA06788.1
Corresponding_proteinJA07698
Corresponding_oligo_setGPL14145_CJA06788_227-286_0.703_83_C
GPL14145_CJA06788_441-500_0.923_3_B
GPL14145_CJA06788_506-565_0.903_12_A
Matching_cDNAjaponica_GG8397|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA06788_227-286_0.703_83_C
GPL14145_CJA06788_441-500_0.923_3_B
GPL14145_CJA06788_506-565_0.903_12_A
RNASeq_FPKMWBls:00000046.83724From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.324615From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.176917From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.327985From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.359049From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.465482From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.525048From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.712725From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.806267From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.842799From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17503.g17003.t1[100726 mh6]
Methodcurated