WormBase Tree Display for CDS: CJA13500

CJA13500 Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig14111
  Structure: Source_exons: 1 84
      296 751
      1608 1764
      1813 1868
      4941 5245
      6218 6791
      6835 7095
      7641 8552
      8597 8743
      9624 9977
  DB_info: Database: TREEFAM TREEFAM_ID TF315190
    DB_remark: CJP-SMK-1 protein; contains similarity to Pfam domain PF04802 (Phosphatase 4 regulatory subunit 3); contains similarity to Interpro domains IPR006887 (Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain), IPR011993 (PH-like domain superfamily), IPR016024 (Armadillo-type fold)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00132704
    Corresponding_transcript: CJA13500.1
    Corresponding_protein: JA68083
    Corresponding_oligo_set: GPL14145_CJA13500_2661-2720_0.852_62_B
      GPL14145_CJA13500_2766-2825_0.884_22_A
      GPL14145_CJA13500_3332-3391_0.751_206_C
    Matching_cDNA: FF109579 Inferred_automatically: transcript_builder.pl
      japonica_GG7257|c1_g1_i1 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14145_CJA13500_2661-2720_0.852_62_B
      GPL14145_CJA13500_2766-2825_0.884_22_A
      GPL14145_CJA13500_3332-3391_0.751_206_C
    RNASeq_FPKM: WBls:0000004 127.592 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 97.2562 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 37.3355 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        39.9279 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 21.3976 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        24.7917 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        27.3597 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        34.2906 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        68.3326 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        69.6255 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        69.7471 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        73.8877 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
    Remark: based on Augustus prediction Cjap.Contig14111.g9555.t1[100726 mh6]
      [20120518 po]removed two 5' exons to take care of the internal stops
  Method: curated