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WormBase Tree Display for CDS: CJA15938a

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Name Class

CJA15938aSMapS_parentSequenceCjap.Contig17796
StructureSource_exons (14)
DB_infoDB_remarkcontains similarity to Pfam domain PF00520 (Ion transport protein); contains similarity to Interpro domains IPR005821 (Ion transport domain), IPR028823 (Sodium leak channel NALCN), IPR027359 (Voltage-dependent channel domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00135142
Corresponding_transcriptCJA15938a.1
Corresponding_proteinJA48949
Corresponding_oligo_setGPL14145_CJA15938_1575-1634_0.948_1_A
GPL14145_CJA15938_1578-1637_0.933_2_B
GPL14145_CJA15938_1684-1743_0.933_3_C
GPL14145_CJA21832_337-396_0.917_1_A
Matching_cDNAjaponica_GG652|c3_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG652|c4_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA15938_1575-1634_0.948_1_A
GPL14145_CJA15938_1578-1637_0.933_2_B
GPL14145_CJA15938_1684-1743_0.933_3_C
GPL14145_CJA21832_337-396_0.917_1_A
RNASeq_FPKMWBls:00000041.36995From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.22534From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.95906From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
3.14115From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000199From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.000203From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.054602From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.074664From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.109838From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.26056From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
9.4e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17796.g20225.t2[100726 mh6]
Methodcurated