Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CRE05391

expand all nodes | collapse all nodes | view schema

Name Class

CRE05391SMapS_parentSequenceCrem_Contig13
StructureSource_exons197
296897
9381450
15031823
DB_infoDatabaseTREEFAMTREEFAM_IDTF314323
DB_remarkCRE-SDE-2 protein; contains similarity to Pfam domains PF13019 (Silencing defective 2 N-terminal ubiquitin domain), PF13297 (Replication stress response SDE2 C-terminal); contains similarity to Interpro domain IPR024974 (Sde2, N-terminal ubiquitin domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00052844
Corresponding_transcriptCRE05391.1
Corresponding_proteinRP27157
Corresponding_oligo_setGPL14146_CRE05391_512-571_0.876_15_B
GPL14146_CRE05391_1371-1430_0.819_56_A
GPL14146_CRE05391_1391-1450_0.958_1_C
Matching_cDNADR780456Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE05391_1371-1430_0.819_56_A
GPL14146_CRE05391_1391-1450_0.958_1_C
GPL14146_CRE05391_512-571_0.876_15_B
RNASeq_FPKMWBls:000000464.5044From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
72.0151From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (54)
WBls:000002717.9081From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
21.0159From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
25.0931From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
4.09369From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003819.3113From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
2.07259From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
23.1288From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004117.6082From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
17.7671From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
20.0006From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
55.6971From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
57.2436From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
59.4519From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:000006313.293From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
14.4204From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
16.0606From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
16.162From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
16.5863From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
17.5028From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
18.8555From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
19.5533From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
23.6276From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
23.7391From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
Methodcurated