WormBase Tree Display for CDS: PPA03834
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| PPA03834 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (36) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2859-12.10 | ||
| DB_remark | PPA-MEC-18 protein; contains similarity to Pfam domains PF00501 (AMP-binding enzyme), PF07885 (Ion channel), PF13193 (AMP-binding enzyme C-terminal domain); contains similarity to Interpro domains IPR025110 (AMP-binding enzyme, C-terminal domain), IPR000873 (AMP-dependent synthetase/ligase domain), IPR003092 (Two pore domain potassium channel, TASK family), IPR003280 (Two pore domain potassium channel), IPR013099 (Potassium channel domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00093388 | ||||
| Corresponding_transcript | PPA03834.1 | |||||
| Corresponding_protein | PP64909 | |||||
| Corresponding_oligo_set | GPL14372_Probes_2037 | |||||
| GPL14372_Probes_2038 | ||||||
| GPL14372_Probes_2039 | ||||||
| GPL14372_Probes_2040 | ||||||
| GPL14372_Probes_2041 | ||||||
| GPL14372_Probes_2042 | ||||||
| GPL14372_Probes_2043 | ||||||
| GPL14372_Probes_2044 | ||||||
| GPL14372_Probes_2045 | ||||||
| GPL14372_Probes_39098 | ||||||
| Microarray_results | GPL14372_Probes_2037 | |||||
| GPL14372_Probes_2038 | ||||||
| GPL14372_Probes_2039 | ||||||
| GPL14372_Probes_2040 | ||||||
| GPL14372_Probes_2041 | ||||||
| GPL14372_Probes_2042 | ||||||
| GPL14372_Probes_2043 | ||||||
| GPL14372_Probes_2044 | ||||||
| GPL14372_Probes_2045 | ||||||
| GPL14372_Probes_39098 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2859-12.10 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
