WormBase Tree Display for CDS: PPA09539
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| PPA09539 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (57) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-33.2 | ||
| TREEFAM | TREEFAM_ID | TF328771 | ||||
| DB_remark | PPA-HUM-2 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF00612 (IQ calmodulin-binding motif), PF01843 (DIL domain); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002710 (Dilute domain), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR000048 (IQ motif, EF-hand binding site), IPR001609 (Myosin head, motor domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00099093 | ||||
| Corresponding_transcript | PPA09539.1 | |||||
| Corresponding_protein | PP75348 | |||||
| Corresponding_oligo_set | GPL14372_Probes_33249 | |||||
| GPL14372_Probes_33250 | ||||||
| GPL14372_Probes_33252 | ||||||
| GPL14372_Probes_33253 | ||||||
| GPL14372_Probes_90930 | ||||||
| GPL14372_Probes_90931 | ||||||
| GPL14372_Probes_90932 | ||||||
| GPL14372_Probes_90933 | ||||||
| GPL14372_Probes_90935 | ||||||
| GPL14372_Probes_90936 | ||||||
| Microarray_results | GPL14372_Probes_33249 | |||||
| GPL14372_Probes_33250 | ||||||
| GPL14372_Probes_33252 | ||||||
| GPL14372_Probes_33253 | ||||||
| GPL14372_Probes_90930 | ||||||
| GPL14372_Probes_90931 | ||||||
| GPL14372_Probes_90932 | ||||||
| GPL14372_Probes_90933 | ||||||
| GPL14372_Probes_90935 | ||||||
| GPL14372_Probes_90936 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.1776 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 19 Sep 2019 15:17:41 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S2844-33.2 | Curator_confirmed | WBPerson4055 | |||
| [190919 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
