WormBase Tree Display for CDS: PPA09608
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PPA09608 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 63 | |||
515 | 730 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S293-11.82 | ||
TREEFAM | TREEFAM_ID | TF315116 | ||||
DB_remark | PPA-SMO-1 protein; contains similarity to Pfam domain PF11976 (Ubiquitin-2 like Rad60 SUMO-like); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR022617 (Rad60/SUMO-like domain), IPR000626 (Ubiquitin-like domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00099162 | ||||
Corresponding_transcript | PPA09608.1 | |||||
Corresponding_protein | PP27395 | |||||
Corresponding_oligo_set | GPL14372_Probes_65042 | |||||
Microarray_results | GPL14372_Probes_65042 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S293-11.82 | Curator_confirmed | WBPerson4055 | |||
Method | curated |