WormBase Tree Display for CDS: PPA10786
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PPA10786 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 99 | |||
203 | 268 | |||||
358 | 460 | |||||
506 | 583 | |||||
629 | 702 | |||||
750 | 832 | |||||
875 | 959 | |||||
1012 | 1107 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-4.42 | ||
DB_remark | contains similarity to Pfam domain PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00100340 | ||||
Corresponding_transcript | PPA10786.1 | |||||
Corresponding_protein | PP73134 | |||||
Corresponding_oligo_set | GPL14372_Probes_71370 | |||||
GPL14372_Probes_71371 | ||||||
GPL14372_Probes_71372 | ||||||
GPL14372_Probes_71373 | ||||||
Microarray_results | GPL14372_Probes_71370 | |||||
GPL14372_Probes_71371 | ||||||
GPL14372_Probes_71372 | ||||||
GPL14372_Probes_71373 | ||||||
RNASeq_FPKM | WBls:0000032 | 6.70877 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 15.8512 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-4.42 | Curator_confirmed | WBPerson4055 | |||
Method | curated |