WormBase Tree Display for CDS: PPA15076
expand all nodes | collapse all nodes | view schema
PPA15076 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (38) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-27.68 | ||
DB_remark | PPA-MMCM-1 protein; contains similarity to Pfam domains PF01642 (Methylmalonyl-CoA mutase), PF02310 (B12 binding domain); contains similarity to Interpro domains IPR027267 (AH/BAR domain superfamily), IPR006098 (Methylmalonyl-CoA mutase, alpha chain, catalytic), IPR006099 (Methylmalonyl-CoA mutase, alpha/beta chain, catalytic), IPR016176 (Cobalamin (vitamin B12)-dependent enzyme, catalytic), IPR036724 (Cobalamin-binding domain superfamily), IPR006159 (Methylmalonyl-CoA mutase, C-terminal), IPR006158 (Cobalamin (vitamin B12)-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00104630 | ||||
Corresponding_transcript | PPA15076.1 | |||||
Corresponding_protein | PP72197 | |||||
Corresponding_oligo_set | GPL14372_Probes_46930 | |||||
GPL14372_Probes_46931 | ||||||
GPL14372_Probes_46934 | ||||||
GPL14372_Probes_46935 | ||||||
GPL14372_Probes_46936 | ||||||
GPL14372_Probes_5796 | ||||||
GPL14372_Probes_5797 | ||||||
GPL14372_Probes_5798 | ||||||
Microarray_results | GPL14372_Probes_5796 | |||||
GPL14372_Probes_5797 | ||||||
GPL14372_Probes_5798 | ||||||
GPL14372_Probes_46930 | ||||||
GPL14372_Probes_46931 | ||||||
GPL14372_Probes_46934 | ||||||
GPL14372_Probes_46935 | ||||||
GPL14372_Probes_46936 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.97815 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.03402 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S66-27.68 | Curator_confirmed | WBPerson4055 | |||
Method | curated |