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WormBase Tree Display for CDS: PPA18963

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Name Class

PPA18963SMapS_parentSequencePPA_ChrI
StructureSource_exons (68)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-24.79
DB_remarkPPA-CTPS-1 protein; contains similarity to Pfam domains PF00117 (Glutamine amidotransferase class-I), PF06418 (CTP synthase N-terminus), PF13091 (PLD-like domain), PF16054 (Transmembrane protein family 72); contains similarity to Interpro domains IPR029062 (Class I glutamine amidotransferase-like), IPR017456 (CTP synthase, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR032055 (Transmembrane protein 72), IPR004468 (CTP synthase), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR017926 (Glutamine amidotransferase), IPR025202 (Phospholipase D-like domain), IPR001736 (Phospholipase D/Transphosphatidylase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00108517
Corresponding_transcriptPPA18963.1
Corresponding_proteinPP73532
Corresponding_oligo_set (11)
Matching_cDNAFG104496Inferred_automaticallytranscript_builder.pl
CN656589Inferred_automaticallytranscript_builder.pl
CN657850Inferred_automaticallytranscript_builder.pl
BI703599Inferred_automaticallytranscript_builder.pl
FG105328Inferred_automaticallytranscript_builder.pl
Microarray_results (11)
RNASeq_FPKMWBls:00000327.0596From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010125.3307From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-24.79Curator_confirmedWBPerson4055
Methodcurated