WormBase Tree Display for CDS: PPA18963
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PPA18963 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (68) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-24.79 | ||
DB_remark | PPA-CTPS-1 protein; contains similarity to Pfam domains PF00117 (Glutamine amidotransferase class-I), PF06418 (CTP synthase N-terminus), PF13091 (PLD-like domain), PF16054 (Transmembrane protein family 72); contains similarity to Interpro domains IPR029062 (Class I glutamine amidotransferase-like), IPR017456 (CTP synthase, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR032055 (Transmembrane protein 72), IPR004468 (CTP synthase), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR017926 (Glutamine amidotransferase), IPR025202 (Phospholipase D-like domain), IPR001736 (Phospholipase D/Transphosphatidylase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00108517 | ||||
Corresponding_transcript | PPA18963.1 | |||||
Corresponding_protein | PP73532 | |||||
Corresponding_oligo_set (11) | ||||||
Matching_cDNA | FG104496 | Inferred_automatically | transcript_builder.pl | |||
CN656589 | Inferred_automatically | transcript_builder.pl | ||||
CN657850 | Inferred_automatically | transcript_builder.pl | ||||
BI703599 | Inferred_automatically | transcript_builder.pl | ||||
FG105328 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 7.0596 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 25.3307 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-24.79 | Curator_confirmed | WBPerson4055 | |||
Method | curated |