WormBase Tree Display for CDS: PPA19720
expand all nodes | collapse all nodes | view schema
| PPA19720 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (59) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S285-5.6 | ||
| DB_remark | PPA-LRK-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF01423 (LSM domain), PF12796 (Ankyrin repeats (3 copies)), PF13855 (Leucine rich repeat); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain superfamily), IPR003591 (Leucine-rich repeat, typical subtype), IPR002110 (Ankyrin repeat), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR020683 (Domain of unknown function DUF3447), IPR000719 (Protein kinase domain), IPR010920 (LSM domain superfamily), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00109274 | ||||
| Corresponding_transcript | PPA19720.1 | |||||
| Corresponding_protein | PP61275 | |||||
| Corresponding_oligo_set | GPL14372_Probes_4251 | |||||
| GPL14372_Probes_4252 | ||||||
| GPL14372_Probes_4255 | ||||||
| GPL14372_Probes_43561 | ||||||
| GPL14372_Probes_43562 | ||||||
| GPL14372_Probes_43563 | ||||||
| GPL14372_Probes_43566 | ||||||
| GPL14372_Probes_43567 | ||||||
| GPL14372_Probes_43568 | ||||||
| Microarray_results | GPL14372_Probes_4251 | |||||
| GPL14372_Probes_4252 | ||||||
| GPL14372_Probes_4255 | ||||||
| GPL14372_Probes_43561 | ||||||
| GPL14372_Probes_43562 | ||||||
| GPL14372_Probes_43563 | ||||||
| GPL14372_Probes_43566 | ||||||
| GPL14372_Probes_43567 | ||||||
| GPL14372_Probes_43568 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.18772 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S285-5.6 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
