WormBase Tree Display for CDS: PPA20031
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PPA20031 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-88.37 | ||
DB_remark | PPA-VHP-1 protein; contains similarity to Pfam domains PF00581 (Rhodanese-like domain), PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR036873 (Rhodanese-like domain superfamily), IPR008343 (Mitogen-activated protein (MAP) kinase phosphatase), IPR001763 (Rhodanese-like domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109585 | ||||
Corresponding_transcript | PPA20031.1 | |||||
Corresponding_protein | PP75275 | |||||
Corresponding_oligo_set | GPL14372_Probes_13107 | |||||
GPL14372_Probes_13108 | ||||||
GPL14372_Probes_13109 | ||||||
GPL14372_Probes_13110 | ||||||
Microarray_results | GPL14372_Probes_13107 | |||||
GPL14372_Probes_13108 | ||||||
GPL14372_Probes_13109 | ||||||
GPL14372_Probes_13110 | ||||||
RNASeq_FPKM | WBls:0000032 | 8.41767 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.95295 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 19 Sep 2019 14:10:31 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S10-88.37 | Curator_confirmed | WBPerson4055 | |||
[190919 mh6] The set of genes: WBGene00109585 WBGene00282298 has been merged and this structure is based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |