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WormBase Tree Display for CDS: PPA20031

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Name Class

PPA20031EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrII
StructureSource_exons (19)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-88.37
DB_remarkPPA-VHP-1 protein; contains similarity to Pfam domains PF00581 (Rhodanese-like domain), PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR036873 (Rhodanese-like domain superfamily), IPR008343 (Mitogen-activated protein (MAP) kinase phosphatase), IPR001763 (Rhodanese-like domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00109585
Corresponding_transcriptPPA20031.1
Corresponding_proteinPP75275
Corresponding_oligo_setGPL14372_Probes_13107
GPL14372_Probes_13108
GPL14372_Probes_13109
GPL14372_Probes_13110
Microarray_resultsGPL14372_Probes_13107
GPL14372_Probes_13108
GPL14372_Probes_13109
GPL14372_Probes_13110
RNASeq_FPKMWBls:00000328.41767From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001017.95295From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed19 Sep 2019 14:10:31WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S10-88.37Curator_confirmedWBPerson4055
[190919 mh6] The set of genes: WBGene00109585 WBGene00282298 has been merged and this structure is based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated