WormBase Tree Display for CDS: PPA25564
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PPA25564 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrV | |||
Structure | Source_exons | 1 | 111 | |||
154 | 243 | |||||
287 | 396 | |||||
448 | 499 | |||||
563 | 642 | |||||
688 | 781 | |||||
1082 | 1213 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S504-0.7 | ||
TREEFAM | TREEFAM_ID | TF300755 | ||||
DB_remark | PPA-ERCC-1 protein; contains similarity to Pfam domain PF03834 (Binding domain of DNA repair protein Ercc1 (rad10/Swi10)); contains similarity to Interpro domains IPR011335 (Restriction endonuclease type II-like), IPR010994 (RuvA domain 2-like), IPR004579 (ERCC1/RAD10/SWI10 family) | |||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00115118 | ||||
Corresponding_transcript | PPA25564.1 | |||||
Corresponding_protein | PP75848 | |||||
Corresponding_oligo_set | GPL14372_Probes_70356 | |||||
GPL14372_Probes_70357 | ||||||
GPL14372_Probes_70358 | ||||||
GPL14372_Probes_70359 | ||||||
Matching_cDNA | FG100941 | Inferred_automatically | transcript_builder.pl | |||
AW097659 | Inferred_automatically | transcript_builder.pl | ||||
FG104137 | Inferred_automatically | transcript_builder.pl | ||||
CN657625 | Inferred_automatically | transcript_builder.pl | ||||
CN657986 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_70356 | |||||
GPL14372_Probes_70357 | ||||||
GPL14372_Probes_70358 | ||||||
GPL14372_Probes_70359 | ||||||
RNASeq_FPKM | WBls:0000032 | 12.412 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.6628 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 14 Jan 2020 14:04:16 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S504-0.7 | Curator_confirmed | WBPerson4055 | |||
[200114 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |