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WormBase Tree Display for CDS: PPA25564

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Name Class

PPA25564EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrV
StructureSource_exons1111
154243
287396
448499
563642
688781
10821213
DB_infoDatabasepristionchus.orgcdsgene-UMM-S504-0.7
TREEFAMTREEFAM_IDTF300755
DB_remarkPPA-ERCC-1 protein; contains similarity to Pfam domain PF03834 (Binding domain of DNA repair protein Ercc1 (rad10/Swi10)); contains similarity to Interpro domains IPR011335 (Restriction endonuclease type II-like), IPR010994 (RuvA domain 2-like), IPR004579 (ERCC1/RAD10/SWI10 family)
OriginFrom_laboratoryHX
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00115118
Corresponding_transcriptPPA25564.1
Corresponding_proteinPP75848
Corresponding_oligo_setGPL14372_Probes_70356
GPL14372_Probes_70357
GPL14372_Probes_70358
GPL14372_Probes_70359
Matching_cDNAFG100941Inferred_automaticallytranscript_builder.pl
AW097659Inferred_automaticallytranscript_builder.pl
FG104137Inferred_automaticallytranscript_builder.pl
CN657625Inferred_automaticallytranscript_builder.pl
CN657986Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_70356
GPL14372_Probes_70357
GPL14372_Probes_70358
GPL14372_Probes_70359
RNASeq_FPKMWBls:000003212.412From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010114.6628From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed14 Jan 2020 14:04:16WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S504-0.7Curator_confirmedWBPerson4055
[200114 mh6] This gene has been split based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated