WormBase Tree Display for Gene: WBGene00115118
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| WBGene00115118 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-ercc-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA25564 | ||||||||
| Molecular_name | PPA25564 | ||||||||
| PPA25564.1 | |||||||||
| PP75848 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000082216 | ||||||||
| UMM-S504-0.7 | Person_evidence | WBPerson606 | |||||||
| Ppa-nubp-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-ercc-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-nubp-1 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-nubp-1 | ||||
| 5 | 20 Jan 2020 15:16:19 | WBPerson4055 | Event | Split_into | WBGene00306028 | ||||
| 6 | 20 Jan 2020 15:16:40 | WBPerson4055 | Event | Split_into | WBGene00306029 | ||||
| 7 | 04 Jun 2020 14:38:21 | WBPerson1983 | Name_change | CGC_name | Ppa-ercc-1 | ||||
| Other_name | Ppa-nubp-1 | ||||||||
| 8 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 9 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ercc-1 | ||||
| Split_into | WBGene00306028 | ||||||||
| WBGene00306029 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ercc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 12.412 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 12.412 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 14.6628 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 9.02493 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00184909 | ||||||||
| 00184910 | |||||||||
| 00184911 | |||||||||
| Ortholog (26) | |||||||||
| Structured_description | Automated_description | Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA repair. Predicted to be located in nucleus. Is an ortholog of C. elegans ercc-1. In C. elegans, ercc-1 is involved in UV-damage excision repair and base-excision repair. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA25564 | |||||||
| Corresponding_CDS_history | PPA25564:pp275 | ||||||||
| Corresponding_transcript | PPA25564.1 | ||||||||
| Other_sequence | PPC01714_1 | ||||||||
| NBC02798_1 | |||||||||
| PP02562 | |||||||||
| NB06682 | |||||||||
| Tcol_isotig18632 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_70356 | |||||||
| GPL14372_Probes_70357 | |||||||||
| GPL14372_Probes_70358 | |||||||||
| GPL14372_Probes_70359 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-nubp-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-ercc-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
