WormBase Tree Display for CDS: PPA25583
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| PPA25583 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (42) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S293-10.10 | ||
| DB_remark | PPA-DAF-9.2 protein; contains similarity to Pfam domains PF00067 (Cytochrome P450), PF01663 (Type I phosphodiesterase / nucleotide pyrophosphatase); contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR036396 (Cytochrome P450 superfamily), IPR017850 (Alkaline-phosphatase-like, core domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00115137 | ||||
| Corresponding_transcript | PPA25583.1 | |||||
| Corresponding_protein | PP73232 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64977 | |||||
| GPL14372_Probes_64978 | ||||||
| GPL14372_Probes_64979 | ||||||
| GPL14372_Probes_64980 | ||||||
| GPL14372_Probes_64981 | ||||||
| GPL14372_Probes_64982 | ||||||
| Microarray_results | GPL14372_Probes_64977 | |||||
| GPL14372_Probes_64978 | ||||||
| GPL14372_Probes_64979 | ||||||
| GPL14372_Probes_64980 | ||||||
| GPL14372_Probes_64981 | ||||||
| GPL14372_Probes_64982 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.94124 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S293-10.10 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
