WormBase Tree Display for CDS: PPA28209

PPA28209 SMap: S_parent: Sequence: PPA_ChrII
  Structure: Source_exons: 1 72
      171 227
      401 472
      1533 1597
      1726 1801
      1903 1968
      2042 2200
      2397 2526
      2604 2708
      2778 2913
      2989 3058
      3133 3268
      3369 3445
      3540 3734
      3803 3973
      4049 4267
      4333 4450
      4533 4776
      4846 5014
      5086 5310
      5354 5475
      5527 5659
      5741 5907
      5986 6124
      6189 6770
      6839 7021
      7082 7192
      7259 7462
      7559 7789
      7886 8070
      8145 8376
      8527 8666
      8792 8912
      8981 9061
      9130 9240
      9308 9379
      9446 9556
      9673 9744
      9808 9864
      10002 10163
      10284 10427
  DB_info: Database: pristionchus.org cds gene-UMA-S10-76.28
    DB_remark: PPA-UNC-54 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail), PF02736 (Myosin N-terminal SH3-like domain); contains similarity to Interpro domains IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00117763
    Corresponding_transcript: PPA28209.1
    Corresponding_protein: PP65746
    Corresponding_oligo_set: GPL14372_Probes_12539
      GPL14372_Probes_58914
      GPL14372_Probes_58916
    Matching_cDNA: FE939379 Inferred_automatically: transcript_builder.pl
      FE931691 Inferred_automatically: transcript_builder.pl
      AW097572 Inferred_automatically: transcript_builder.pl
      AW097001 Inferred_automatically: transcript_builder.pl
      AW052325 Inferred_automatically: transcript_builder.pl
      FE931993 Inferred_automatically: transcript_builder.pl
      AI986550 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_12539
      GPL14372_Probes_58914
      GPL14372_Probes_58916
    RNASeq_FPKM: WBls:0000032 4.86452 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 7.65936 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMA-S10-76.28 Curator_confirmed: WBPerson4055
  Method: curated