WormBase Tree Display for CDS: PPA28209
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PPA28209 | SMap | S_parent | Sequence | PPA_ChrII | |
---|---|---|---|---|---|
Structure | Source_exons (41) | ||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-76.28 | |
DB_remark | PPA-UNC-54 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail), PF02736 (Myosin N-terminal SH3-like domain); contains similarity to Interpro domains IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain) | ||||
Origin | From_laboratory | RS | |||
Species | Pristionchus pacificus | ||||
Properties | Coding | CDS | |||
CDS_predicted_by | pristionchus.org | ||||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | WBGene00117763 | |||
Corresponding_transcript | PPA28209.1 | ||||
Corresponding_protein | PP65746 | ||||
Corresponding_oligo_set | GPL14372_Probes_12539 | ||||
GPL14372_Probes_58914 | |||||
GPL14372_Probes_58916 | |||||
Matching_cDNA | FE939379 | Inferred_automatically | transcript_builder.pl | ||
FE931691 | Inferred_automatically | transcript_builder.pl | |||
AW097572 | Inferred_automatically | transcript_builder.pl | |||
AW097001 | Inferred_automatically | transcript_builder.pl | |||
AW052325 | Inferred_automatically | transcript_builder.pl | |||
FE931993 | Inferred_automatically | transcript_builder.pl | |||
AI986550 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_12539 | ||||
GPL14372_Probes_58914 | |||||
GPL14372_Probes_58916 | |||||
RNASeq_FPKM (2) | |||||
Remark | [171116 mh6] renamed from gene-UMA-S10-76.28 | Curator_confirmed | WBPerson4055 | ||
Method | curated |