WormBase Tree Display for CDS: Y57G11C.47
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| Y57G11C.47 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y57G11C | |||
| Structure | Source_exons | 1 | 120 | |||
| 319 | 450 | |||||
| 1127 | 1357 | |||||
| 1793 | 1855 | |||||
| 2830 | 2918 | |||||
| 3544 | 3684 | |||||
| 3831 | 3954 | |||||
| 4400 | 4450 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.5.1.19 | ||
| TrEMBL | UniProtAcc | Q7YTI0 | ||||
| UniProt | UniProtAcc | Q7YTI0 | ||||
| UniProt_GCRP | UniProtAcc | Q7YTI0 | ||||
| AlphaFold | entry | Q7YTI0 | ||||
| NCBI_protein | GI_number | GI:33300525 | ||||
| TREEFAM | TREEFAM_ID | TF312905 | ||||
| Protein_id | CHROMOSOME_IV | CAE18030 | 1 | |||
| DB_remark | PNC-2 protein; contains similarity to Pfam domain PF00857 (Isochorismatase family); contains similarity to Interpro domains IPR000868 (Isochorismatase-like), IPR036380 (Isochorismatase-like superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00013336 | ||||
| Corresponding_transcript | Y57G11C.47.1 | |||||
| Corresponding_protein | CE35124 | |||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | male_Nanopore_Roach_150100 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_78743 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_208168 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3861|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3861|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_121449 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_141075 | Inferred_automatically | transcript_builder.pl | ||||
| FM249577 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_149416 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (13) | ||||||
| Brief_identification | nicotinamidase | Accession_evidence | UniProt | TR:Q7YTI0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 22 May 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [030722 dl] Predicted by Avril Coghlan's comparative analysis of elegans and briggsae. This prediction is supported by briggsae similarity | Curator_confirmed | WBPerson1846 | |||
| Method | curated |
