WormBase Tree Display for Gene: WBGene00002220
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| WBGene00002220 | SMap | S_parent | Sequence | C15C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gcc-1 | Paper_evidence | WBPaper00046586 | |||||
| Person_evidence | WBPerson298 | ||||||||
| Sequence_name | C15C7.2 | ||||||||
| Molecular_name | C15C7.2 | ||||||||
| C15C7.2.1 | |||||||||
| CE38486 | |||||||||
| Other_name | klp-8 | Person_evidence | WBPerson589 | ||||||
| CELE_C15C7.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | gcc-1 | ||||||||
| DB_info | Database | AceView | gene | XD781 | |||||
| WormQTL | gene | WBGene00002220 | |||||||
| WormFlux | gene | WBGene00002220 | |||||||
| NDB | locus_tag | CELE_C15C7.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002220|UniProtKB=Q18013 | |||||||
| family | PTHR23157 | ||||||||
| NCBI | gene | 180606 | |||||||
| RefSeq | protein | NM_076142.8 | |||||||
| TREEFAM | TREEFAM_ID | TF318590 | |||||||
| TrEMBL | UniProtAcc | Q18013 | |||||||
| UniProt_GCRP | UniProtAcc | Q18013 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 25 Mar 2015 16:36:59 | WBPerson2970 | Name_change | CGC_name | gcc-1 | ||||
| Other_name | klp-8 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gcc | ||||||||
| Allele | WBVar01131860 | ||||||||
| WBVar01131861 | |||||||||
| WBVar01131862 | |||||||||
| WBVar01131863 | |||||||||
| WBVar00076927 | |||||||||
| WBVar01131864 | |||||||||
| WBVar01131865 | |||||||||
| WBVar01131866 | |||||||||
| WBVar01131867 | |||||||||
| WBVar02072648 | |||||||||
| WBVar01131868 | |||||||||
| WBVar01131869 | |||||||||
| WBVar01486645 | |||||||||
| WBVar01131870 | |||||||||
| WBVar01131871 | |||||||||
| WBVar02026885 | |||||||||
| WBVar01131872 | |||||||||
| WBVar01131873 | |||||||||
| WBVar01131874 | |||||||||
| WBVar01131875 | |||||||||
| WBVar01131876 | |||||||||
| WBVar01131877 | |||||||||
| WBVar01131878 | |||||||||
| WBVar01131879 | |||||||||
| WBVar01131880 | |||||||||
| WBVar01131881 | |||||||||
| WBVar01131882 | |||||||||
| WBVar01131883 | |||||||||
| WBVar01131884 | |||||||||
| WBVar01131885 | |||||||||
| WBVar01131886 | |||||||||
| WBVar01131887 | |||||||||
| WBVar00498424 | |||||||||
| WBVar00498425 | |||||||||
| WBVar01131888 | |||||||||
| WBVar01131889 | |||||||||
| WBVar00498426 | |||||||||
| WBVar00498427 | |||||||||
| WBVar02050429 | |||||||||
| WBVar01131890 | |||||||||
| WBVar00498428 | |||||||||
| WBVar01703353 | |||||||||
| WBVar00498429 | |||||||||
| WBVar00498430 | |||||||||
| WBVar00498431 | |||||||||
| WBVar00498432 | |||||||||
| WBVar00498433 | |||||||||
| WBVar00498434 | |||||||||
| WBVar00498435 | |||||||||
| WBVar00498436 | |||||||||
| WBVar01757926 | |||||||||
| WBVar01757927 | |||||||||
| WBVar00093690 | |||||||||
| WBVar01757928 | |||||||||
| WBVar01757929 | |||||||||
| WBVar01757930 | |||||||||
| WBVar01757931 | |||||||||
| WBVar01468200 | |||||||||
| WBVar01468201 | |||||||||
| WBVar01468202 | |||||||||
| WBVar02138976 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01830015 | |||||||||
| WBVar01830016 | |||||||||
| WBVar01822417 | |||||||||
| WBVar02152667 | |||||||||
| WBVar01822418 | |||||||||
| WBVar01490282 | |||||||||
| WBVar00296304 | |||||||||
| WBVar02123329 | |||||||||
| Legacy_information | [Siddiqui SS ] related to kinesin like protein by sequence similarity. | ||||||||
| Strain | WBStrain00002621 | ||||||||
| WBStrain00032635 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059939 | ||||||||
| 00059940 | |||||||||
| 00059941 | |||||||||
| Contained_in_operon | CEOPX040 | ||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00011503 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | gcc-1 encodes a coiled-coil protein with a C-terminal Golgi-targeting GRIP domain that is the C. elegans ortholog of the human golgin, GCC1; by sequence similarity, GCC-1 is predicted to function in retrograde transport from early endosomes to the trans-Golgi network; large-scale promoter expression studies report that gcc-1 is expressed in multiple tissues including, but not limited to, the pharynx, neurons, hypodermis, and excretory cell. | Paper_evidence | WBPaper00046586 | |||||
| WBPaper00030963 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00031006 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 21 Apr 2015 00:00:00 | ||||||||
| Automated_description | Predicted to be located in Golgi apparatus. Expressed in several structures, including head. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15C7.2 | |||||||
| Corresponding_CDS_history | C15C7.2:wp142 | ||||||||
| Corresponding_transcript | C15C7.2.1 | ||||||||
| Other_sequence | Tcir_isotig22567 | ||||||||
| CBC16867_1 | |||||||||
| Tcir_isotig17360 | |||||||||
| Associated_feature | WBsf647918 | ||||||||
| WBsf662582 | |||||||||
| WBsf662583 | |||||||||
| WBsf1004533 | |||||||||
| WBsf1004534 | |||||||||
| WBsf1004535 | |||||||||
| WBsf1022574 | |||||||||
| WBsf1022575 | |||||||||
| WBsf235455 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040595 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010783 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1422 | ||||||||
| Expr4831 | |||||||||
| Expr5269 | |||||||||
| Expr15134 | |||||||||
| Expr1012456 | |||||||||
| Expr1031299 | |||||||||
| Expr1144650 | |||||||||
| Expr2011960 | |||||||||
| Expr2030197 | |||||||||
| Drives_construct | WBCnstr00002705 | ||||||||
| WBCnstr00004401 | |||||||||
| WBCnstr00012262 | |||||||||
| WBCnstr00037959 | |||||||||
| Construct_product | WBCnstr00037959 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (6) | |||||||||
| Map_info | Map | X | Position | -11.9123 | Error | 0.110758 | |||
| Positive | Positive_clone | C15C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y43F4 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010295 | ||||||||
| WBPaper00018069 | |||||||||
| WBPaper00018596 | |||||||||
| WBPaper00019563 | |||||||||
| WBPaper00030963 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046586 | |||||||||
| Remark | Sequence connection from [Siddiqui SS], 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| C15C7.2, based on sequence similarity and subcellular localization is a GRIP domain containing Trans-Golgi Network protein of the Golgin family, not a kinesin; thus klp-8 is not an appropriate name | Paper_evidence | WBPaper00046586 | |||||||
| Method | Gene |
