WormBase Tree Display for Gene: WBGene00000135

WBGene00000135 SMap: S_parent: Sequence: M195
  Identity: Version: 1
    Name: CGC_name: amt-3
      Sequence_name: M195.3
      Molecular_name: M195.3
        M195.3.1
        CE32912
      Other_name: CELE_M195.3 Accession_evidence: NDB BX284602
      Public_name: amt-3
    DB_info: Database: AceView gene 2I654
        WormQTL gene WBGene00000135
        WormFlux gene WBGene00000135
        NDB locus_tag CELE_M195.3
        Panther gene CAEEL|WormBase=WBGene00000135|UniProtKB=Q21565
          family PTHR11730
        NCBI gene 174338
        RefSeq protein NM_063360.7
        SwissProt UniProtAcc Q21565
        TREEFAM TREEFAM_ID TF313588
        UniProt_GCRP UniProtAcc Q21565
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: amt
    Allele: WBVar00092381 Inferred_automatically: From strain object: RB1120
      WBVar00092409 Inferred_automatically: From strain object: RB1129
      WBVar00371988
      WBVar00749741
      WBVar00371989
      WBVar00749742
      WBVar00371990
      WBVar00749743
      WBVar01499702
      WBVar00371991
      WBVar00749744
      WBVar00371992
      WBVar00749745
      WBVar00371993
      WBVar00749746
      WBVar00749747
      WBVar00371994
      WBVar00749748
      WBVar00371995
      WBVar00749749
      WBVar00371996
      WBVar00749750
      WBVar00749751
      WBVar00749752
      WBVar00749753
      WBVar00749754
      WBVar00749755
      WBVar00749756
      WBVar00749757
      WBVar00749758
      WBVar00749759
      WBVar00749760
      WBVar00749761
      WBVar00749762
      WBVar00749763
      WBVar00749764
      WBVar00749765
      WBVar01498435
      WBVar00749766
      WBVar00749767
      WBVar00749768
      WBVar00749769
      WBVar00749770
      WBVar00749771
      WBVar00749772
      WBVar00749773
      WBVar00749774
      WBVar00749775
      WBVar00749776
      WBVar00749777
      WBVar00749778
      WBVar00749779
      WBVar00749780
      WBVar00256390
      WBVar01846648
      WBVar01538329
      WBVar01538330
      WBVar01695801
      WBVar01405362
      WBVar01604294
      WBVar00226222
      WBVar00226223
      WBVar00226224
      WBVar00226225
      WBVar01499423
      WBVar01720374
      WBVar02087410
      WBVar00173958
      WBVar00238301
      WBVar00173959
      WBVar00173960
      WBVar00238302
      WBVar02035884
      WBVar01413669
      WBVar01498940
      WBVar01376234
      WBVar01376245
      WBVar01376256
      WBVar01376268
      WBVar02130353
      WBVar01242231
      WBVar01242232
      WBVar01242235
      WBVar01242237
      WBVar00371986
      WBVar00371987
    Strain: WBStrain00002033
      WBStrain00002112
      WBStrain00031824
      WBStrain00031833
    RNASeq_FPKM (74)
    GO_annotation: 00072109
      00072110
      00072111
      00072112
      00072113
      00072114
      00072115
      00106847
      00106848
      00106849
    Ortholog (35)
    Paralog: WBGene00000133 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00000134 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004358 Caenorhabditis elegans From_analysis: Panther
      WBGene00004359 Caenorhabditis elegans From_analysis: Panther
      WBGene00000136 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: amt-3 encodes one of four C. elegans homologs of AMT1 (AT11_ARATH), a high-affinity ammonium transporter from Arabidopsis thaliana; AMT-3 is closely similar to its paralog AMT-2, with somewhat more distant paralogy to AMT-1 and AMT-4. Paper_evidence: WBPaper00013009
            WBPaper00013553
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium homeostasis and ammonium transmembrane transport. Predicted to be located in membrane. Expressed in head and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M195.3
    Corresponding_CDS_history: M195.3:wp92
    Corresponding_transcript: M195.3.1
    Other_sequence (20)
    Associated_feature: WBsf988716
      WBsf988717
      WBsf1012687
      WBsf1012688
      WBsf223488
  Experimental_info: RNAi_result: WBRNAi00051013 Inferred_automatically: RNAi_primary
      WBRNAi00034473 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram846
      Expr6434
      Expr6435
      Expr1025448
      Expr1154721
      Expr2009327
      Expr2027563
    Drives_construct: WBCnstr00002817
      WBCnstr00004432
      WBCnstr00037712
    Construct_product: WBCnstr00037712
    Microarray_results (19)
    Expression_cluster (125)
    Interaction (55)
  Map_info: Map: II Position: 0.767439 Error: 0.000545
    Positive: Positive_clone: M195 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4902
        4274
        4696
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene