WormBase Tree Display for Gene: WBGene00003290
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| WBGene00003290 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T07C5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-62 | Person_evidence | WBPerson18 | |||||
| Sequence_name | T07C5.6 | ||||||||
| Molecular_name | T07C5.6 | ||||||||
| T07C5.6b | |||||||||
| Other_name | cel-mir-62 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_T07C5.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-62 | ||||||||
| DB_info | Database | miRBase | acc | MI0000033 | |||||
| SignaLink | mirna | cel-mir-62 | |||||||
| MirGeneDB | cel | Cel-Mir-62 | |||||||
| NDB | locus_tag | CELE_T07C5.6 | |||||||
| NCBI | gene | 259984 | |||||||
| RefSeq | protein | NR_001269.2 | |||||||
| RNAcentral | URSid | URS000012AD0E | |||||||
| URS000054ECE7 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499888 | |||||||||
| WBVar01499710 | |||||||||
| WBVar02144080 | |||||||||
| WBVar02146670 | |||||||||
| WBVar00090858 | |||||||||
| WBVar01196429 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00027577 | ||||||||
| In_cluster | MIR-62 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-62 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-62 belongs to the mir-50 family of miRNAs based on RNA sequence; mir-62 is expressed constitutively throughout development in normal worms and in glp-4(bn2) adults; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-62 is not known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Jan 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including prg-1; alg-1; and alg-2 based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | T07C5.6 | |||||||
| T07C5.6b | |||||||||
| Other_sequence | AJ487586 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00052735 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002096 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035296 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052736 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2469 | ||||||||
| Expr10906 | |||||||||
| Expression_cluster | WBPaper00045316:miRNA_N2_adult_vs_L4_downregulated_adult | ||||||||
| WBPaper00045316:miRNA_N2_L1_vs_embryo_downregulated_adult | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_adult | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_embryo | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_L1 | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_L2 | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_L3 | |||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_L4 | |||||||||
| WBPaper00046303:P.aeruginosa_upregulated_miRNA | |||||||||
| WBPaper00050386:C.albicans_4h_upregulated | |||||||||
| WBPaper00051404:alg-1(gk214)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-2(ok304)_upregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(ram2)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(tm1163)_upregulated_miRNA | |||||||||
| WBPaper00053318:Aging_downregulated_miRNA_N2 | |||||||||
| WBPaper00053318:mir-71(n4115)_upregulated_miRNA | |||||||||
| WBPaper00054985:PM2.5_upregulated | |||||||||
| WBPaper00055896:drsh-1(ok369)_upregulated | |||||||||
| WBPaper00056868:P.aeruginosa_upregulated_smallRNA | |||||||||
| WBProcess | WBbiopr:00000081 | ||||||||
| Map_info | Map | X | Position | 7.78235 | Error | 0.031695 | |||
| Positive | Positive_clone | T07C5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| WBPaper00024441 | |||||||||
| WBPaper00030805 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032187 | |||||||||
| WBPaper00042641 | |||||||||
| WBPaper00061983 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
