WormBase Tree Display for Gene: WBGene00011280

WBGene00011280 SMap: S_parent: Sequence: R74
  Identity: Version: 2
    Name: CGC_name: pelo-1 Person_evidence: WBPerson959
      Sequence_name: R74.6
      Molecular_name: R74.6
        R74.6.1
        CE01059
      Other_name: CELE_R74.6 Accession_evidence: NDB BX284603
      Public_name: pelo-1
    DB_info: Database: AceView gene 3F292
        WormQTL gene WBGene00011280
        WormFlux gene WBGene00011280
        NDB locus_tag CELE_R74.6
        Panther gene CAEEL|WormBase=WBGene00011280|UniProtKB=P50444
          family PTHR10853
        NCBI gene 187888
        RefSeq protein NM_065441.6
        SwissProt UniProtAcc P50444
        TREEFAM TREEFAM_ID TF105733
        UniProt_GCRP UniProtAcc P50444
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Feb 2017 08:21:36 WBPerson2970 Name_change: CGC_name: pelo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pelo
    Allele (17)
    Strain: WBStrain00002763
      WBStrain00030562
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (53)
    Structured_description: Automated_description: Predicted to enable metal ion binding activity. Predicted to be involved in nonfunctional rRNA decay; nuclear-transcribed mRNA catabolic process, no-go decay; and ribosome disassembly. Predicted to be located in cytoplasm. Is an ortholog of human PELO (pelota mRNA surveillance and ribosome rescue factor). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R74.6
    Corresponding_transcript: R74.6.1
    Other_sequence (45)
    Associated_feature: WBsf650961
      WBsf666751
      WBsf666752
      WBsf226490
  Experimental_info: RNAi_result: WBRNAi00006931 Inferred_automatically: RNAi_primary
      WBRNAi00017920 Inferred_automatically: RNAi_primary
      WBRNAi00052053 Inferred_automatically: RNAi_primary
      WBRNAi00005284 Inferred_automatically: RNAi_primary
      WBRNAi00052052 Inferred_automatically: RNAi_primary
      WBRNAi00052054 Inferred_automatically: RNAi_primary
      WBRNAi00034979 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram299
      Expr6553
      Expr1011079
      Expr1155687
      Expr2014820
      Expr2033054
    Drives_construct: WBCnstr00003291
      WBCnstr00030782
    Construct_product: WBCnstr00030782
    Microarray_results (20)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:hars-1-cct-4_20449
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_upregulated
      cgc4489_group_4
      WBPaper00025032:cluster_36
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031832:slr-2_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_H
      WBPaper00038060:SUMO-1_upregulated
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048624:hlh-25(ok1710)_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc6390]:intrinsic
    Interaction (37)
  Map_info: Map: III Position: -3.67262
    Positive: Positive_clone: R74 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041771
    WBPaper00053553
    WBPaper00055090
    WBPaper00064901
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene