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WormBase Tree Display for Gene: WBGene00017853

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Name Class

WBGene00017853SMapS_parentSequenceF27C1
IdentityVersion1
NameSequence_nameF27C1.3
Molecular_nameF27C1.3
F27C1.3.1
CE28825
Other_nameCELE_F27C1.3Accession_evidenceNDBBX284601
Public_nameF27C1.3
DB_infoDatabaseAceViewgene1F995
WormQTLgeneWBGene00017853
WormFluxgeneWBGene00017853
NDBlocus_tagCELE_F27C1.3
PanthergeneCAEEL|WormBase=WBGene00017853|UniProtKB=P91282
familyPTHR21592
NCBIgene172194
RefSeqproteinNM_059191.5
TREEFAMTREEFAM_IDTF315782
TrEMBLUniProtAccP91282
UniProt_GCRPUniProtAccP91282
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:59WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (15)
RNASeq_FPKM (74)
Ortholog (12)
Paralog (19)
Structured_descriptionAutomated_descriptionEnriched in amphid sheath cell; germ line; and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including Ethanol; methylmercuric chloride; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: DUF236 repeat.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF27C1.3
Corresponding_transcriptF27C1.3.1
Other_sequencePSC01426_1
Tcol_isotig23539
GW412095.1
GE637886.1
Associated_featureWBsf217655
WBsf217656
Experimental_infoRNAi_result (31)
Expr_patternExpr1017278
Expr1149634
Expr2021273
Drives_constructWBCnstr00026963
Construct_productWBCnstr00026963
Microarray_results (18)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00041071:spe-44_downregulated
WBPaper00041954:ethanol_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:rising_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(gk119)_upregulated
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00044786:lem-2(tm1582)_upregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045521:Spermatogenic
WBPaper00045774:clk-1_downregulated
WBPaper00045809:rsd-2(yp10)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00049489:AMsh-glia_enriched
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050231:male_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053599:female_vs_male_downregulated
WBPaper00053657:JU2519_M.humicola-infection_24hr
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055648:sperm_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:flcn-1(ok975)_downregulated
WBPaper00058598:spn-4(tm291)_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059426:SiO2-nanoparticles_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060921:tbh-1(ok1196)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061341:28C_24h_downregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061527:C34B2.3_17388-T01C3.5
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066038:mip-1(how5)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066093:E.coli-purE_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066118:cyclobutrifluram_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_1
cgc4489_group_9
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00033101:spr-5_regulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_E
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
[cgc6390]:intrinsic
Interaction (31)
Map_infoPositivePositive_cloneF27C1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-0.0141132
MethodGene