WormBase Tree Display for Gene: WBGene00271795

WBGene00271795 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 1
    Name: Sequence_name: Y46C8AM.1
      Molecular_name: Y46C8AM.1
        Y46C8AM.1.1
        CE33872
        Y46C8AM.1.2
        Y46C8AM.1.3
      Other_name: CELE_Y46C8AM.1 Accession_evidence: NDB BX284604
      Public_name: Y46C8AM.1
    DB_info: Database: NDB locus_tag CELE_Y46C8AM.1
        Panther gene CAEEL|WormBase=WBGene00271795|UniProtKB=U4PS59
          family PTHR23062
        NCBI gene 34700653
        RefSeq protein NM_001392288.1
        TrEMBL UniProtAcc U4PS59
        UniProt_GCRP UniProtAcc U4PS59
    Species: Caenorhabditis elegans
    History: Version_change: 1 21 Sep 2017 14:34:34 WBPerson4025 Event: Split_from: WBGene00021586
      Split_from: WBGene00021586
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (52)
    RNASeq_FPKM (74)
    Ortholog: CBOVI.g11167 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9529 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP31.g19741 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15733 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4142 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cang_2012_03_13_00447.g10960 Caenorhabditis angaria From_analysis: WormBase-Compara
      chrIV_pilon.g10080 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (38)
    Structured_description: Automated_description: Is affected by several genes including daf-16; skn-1; and daf-18 based on RNA-seq and microarray studies. Is affected by nitroguanidine based on microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y46C8AM.1
    Corresponding_transcript: Y46C8AM.1.1
      Y46C8AM.1.2
      Y46C8AM.1.3
  Experimental_info: RNAi_result: WBRNAi00058944 Inferred_automatically: RNAi_primary
      WBRNAi00069445 Inferred_automatically: RNAi_primary
      WBRNAi00056655 Inferred_automatically: RNAi_primary
      WBRNAi00013320 Inferred_automatically: RNAi_primary
    Microarray_results (13)
    Expression_cluster: WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064156:lipl-4(overexpress)_upregulated
      WBPaper00065841:30_3
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00055899:nitroguanidine_regulated
  Map_info: Positive: Positive_clone: Y46C8AM Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV -1.28451
  Method: Gene