WormBase Tree Display for Gene: WBGene00021586
expand all nodes | collapse all nodes | view schema
| WBGene00021586 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | clec-75 | Person_evidence | WBPerson261 | |||||
| WBPerson655 | |||||||||
| Sequence_name | Y46C8AL.9 | ||||||||
| Molecular_name | Y46C8AL.9 | ||||||||
| Y46C8AL.9.1 | |||||||||
| CE52171 | |||||||||
| Other_name | CELE_Y46C8AL.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-75 | ||||||||
| DB_info | Database | AceView | gene | 4E729 | |||||
| WormQTL | gene | WBGene00021586 | |||||||
| WormFlux | gene | WBGene00021586 | |||||||
| NDB | locus_tag | CELE_Y46C8AL.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021586|UniProtKB=A0A2C9C3D7 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 189949 | |||||||
| RefSeq | protein | NM_001356917.3 | |||||||
| TrEMBL | UniProtAcc | A0A2C9C3D7 | |||||||
| UniProt_GCRP | UniProtAcc | A0A2C9C3D7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-75 | ||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00021588 | ||||
| 4 | 21 Sep 2017 14:34:34 | WBPerson4025 | Event | Split_into | WBGene00271795 | ||||
| Acquires_merge | WBGene00021588 | ||||||||
| Split_into | WBGene00271795 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (51) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (52) | |||||||||
| Paralog (43) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46C8AL.9 | |||||||
| Corresponding_CDS_history | Y46C8AL.9:wp88 | ||||||||
| Y46C8AL.9:wp131 | |||||||||
| Y46C8AL.9a:wp124 | |||||||||
| Y46C8AL.9a:wp156 | |||||||||
| Y46C8AL.9a:wp261 | |||||||||
| Y46C8AL.9b:wp156 | |||||||||
| Y46C8AL.9b:wp261 | |||||||||
| Y46C8AL.9c:wp261 | |||||||||
| Y46C8AL.9e:wp261 | |||||||||
| Corresponding_transcript | Y46C8AL.9.1 | ||||||||
| Corresponding_transcript_history | Y46C8AL.9d:wp261 | ||||||||
| Other_sequence | CBC04507_1 | ||||||||
| MHC11690_1 | |||||||||
| Associated_feature | WBsf645897 | ||||||||
| WBsf228142 | |||||||||
| WBsf228143 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056653 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020636 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011611 | ||||||||
| Expr1160122 | |||||||||
| Expr2010207 | |||||||||
| Expr2028448 | |||||||||
| Microarray_results | SMD_Y46C8_100.C | ||||||||
| 177232_at | |||||||||
| A_12_P112833 | |||||||||
| Aff_Y46C8_100.C | |||||||||
| GPL14144_Y46C8AL.9b_712-771_0.882_24_A | |||||||||
| GPL3518_CE32529 | |||||||||
| GPL8673_Y46C8AL_9aP00571 | |||||||||
| GPL8673_Y46C8AL_9aP01091 | |||||||||
| GPL9450_Y46C8AL.9 | |||||||||
| cea2.i.30295 | |||||||||
| Expression_cluster (129) | |||||||||
| SAGE_tag | SAGE:ccagaagaaa | Strand | Antisense | ||||||
| SAGE:cacttgtctataatatg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cacttgtcta | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Map_info | Map | IV | Position | -1.2976 | Error | 0.01659 | |||
| Positive | Positive_clone | Y46C8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00062388 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
