WormBase Tree Display for Gene: WBGene00001070
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| WBGene00001070 | SMap | S_parent | Sequence | C31H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-8 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C31H2.2 | ||||||||
| Molecular_name | C31H2.2 | ||||||||
| C31H2.2.1 | |||||||||
| CE04130 | |||||||||
| Other_name | CELE_C31H2.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | dpy-8 | ||||||||
| DB_info | Database | AceView | gene | XF768 | |||||
| WormQTL | gene | WBGene00001070 | |||||||
| WormFlux | gene | WBGene00001070 | |||||||
| NDB | locus_tag | CELE_C31H2.2 | |||||||
| NCBI | gene | 180785 | |||||||
| RefSeq | protein | NM_076472.4 | |||||||
| TrEMBL | UniProtAcc | Q18345 | |||||||
| UniProt_GCRP | UniProtAcc | Q18345 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00142984 | ||||||||
| Allele (31) | |||||||||
| Legacy_information | e130 : medium dumpy (non-roller) ES3 ME1. NA > 10 (e1281ts sc24ts (left roller dumpy) etc.). | ||||||||
| See also e2279 | |||||||||
| [C.elegansII] e130 : medium dumpy (non-roller) Suppresses some alleles of glp-1, emb-5.ES3. ME1. OA>10: e1281ts, sc24ts (left roller dumpy), sc44, e2279, q287 (weak?), etc. [Brenner 1971; Maine and Kimble 1989] | |||||||||
| Strain (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060998 | ||||||||
| 00060999 | |||||||||
| 00061000 | |||||||||
| 00061001 | |||||||||
| 00108193 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (162) | |||||||||
| Structured_description | Concise_description | dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate; dpy-8 interacts genetically with emb-5 and glp-1. | Paper_evidence | WBPaper00001153 | |||||
| WBPaper00003197 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Used to study skin disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 02 May 2022 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00001176 | ||||||||
| Molecular_info (4) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1024695 | ||||||||
| Expr1030678 | |||||||||
| Expr1145654 | |||||||||
| Expr2011078 | |||||||||
| Expr2029315 | |||||||||
| Drives_construct | WBCnstr00006811 | ||||||||
| WBCnstr00006814 | |||||||||
| WBCnstr00037101 | |||||||||
| Construct_product | WBCnstr00037101 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (267) | |||||||||
| Interaction (145) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | X | Position | -6.16296 | Error | 0.008733 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDp30 | |||||||
| Positive_clone | C31H2 | Person_evidence | WBPerson297 | ||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Negative | Outside_rearr | mcDf2 | |||||||
| Mapping_data | 2_point | 153 | |||||||
| 162 | |||||||||
| 163 | |||||||||
| 295 | |||||||||
| 3937 | |||||||||
| 4465 | |||||||||
| 7086 | |||||||||
| 7088 | |||||||||
| 7092 | |||||||||
| Multi_point | 160 | ||||||||
| 162 | |||||||||
| 163 | |||||||||
| 313 | |||||||||
| 357 | |||||||||
| 533 | |||||||||
| 534 | |||||||||
| 535 | |||||||||
| 1204 | |||||||||
| 1207 | |||||||||
| 1209 | |||||||||
| 1211 | |||||||||
| 1562 | |||||||||
| 1858 | |||||||||
| 2088 | |||||||||
| 2109 | |||||||||
| 2230 | |||||||||
| 2231 | |||||||||
| 2234 | |||||||||
| 2408 | |||||||||
| 3081 | |||||||||
| 3123 | |||||||||
| 3125 | |||||||||
| 3284 | |||||||||
| 3127 | |||||||||
| 3501 | |||||||||
| 3557 | |||||||||
| 3608 | |||||||||
| 3692 | |||||||||
| 3693 | |||||||||
| 3710 | |||||||||
| 3711 | |||||||||
| 3927 | |||||||||
| 3996 | |||||||||
| 3383 | |||||||||
| 3384 | |||||||||
| 4158 | |||||||||
| 4767 | |||||||||
| 5461 | |||||||||
| Pos_neg_data (17) | |||||||||
| Reference (49) | |||||||||
| Remark | Sequence connection from [Johnstone IL], [020809 krb] | ||||||||
| Method | Gene |
