WormBase Tree Display for Gene: WBGene00004879
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| WBGene00004879 | SMap | S_parent | Sequence | C48B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | smg-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C48B6.6 | ||||||||
| Molecular_name | C48B6.6a | ||||||||
| C48B6.6a.1 | |||||||||
| CE30258 | |||||||||
| C48B6.6b | |||||||||
| CE53740 | |||||||||
| C48B6.6b.1 | |||||||||
| Other_name | mab-1 | ||||||||
| CELE_C48B6.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | smg-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smg | ||||||||
| Reference_allele | WBVar00143847 | ||||||||
| Allele (147) | |||||||||
| Legacy_information | e1228 : adult male has swollen bursa ES3 (adult male) ME1. Adult hermaphrodite has protruding vulva. ES2. NA4 (e1233 e2134spo : similar phenotype). | ||||||||
| See also e1228, e1229, e1233, e2134, e2263, ma127, ma129, ma131 | |||||||||
| [C.elegansII] e1228 : adult male has swollen bursa.ES3 (adult male) ME1. Adult hermaphrodite has protruding vulva. ES2. Recessive suppressor of unc-54(r293), tra-2(e1209), etc. unc-54 nonsense RNAs accumulate.OA>10: e1233, e2134spo (similar phenotypes), ma127, ma131, r861, r913spo, etc. Cloned: 7.8 kb transcript, encodes predicted protein with some kinase similarity in C-term. [Hodgkin et al. 1989; Pulak and Anderson 1993; TR] | |||||||||
| Complementation_data | [Pulak R] complements n2088 | ||||||||
| Strain (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00000226 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000227 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002583 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007028 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description (2) | |||||||||
| Molecular_info | Corresponding_CDS | C48B6.6a | |||||||
| C48B6.6b | |||||||||
| Corresponding_CDS_history | C48B6.6:wp126 | ||||||||
| C48B6.6b:wp273 | |||||||||
| Corresponding_transcript | C48B6.6a.1 | ||||||||
| C48B6.6b.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf664370 | ||||||||
| WBsf664371 | |||||||||
| WBsf664372 | |||||||||
| WBsf664373 | |||||||||
| WBsf984028 | |||||||||
| WBsf1010005 | |||||||||
| WBsf219650 | |||||||||
| WBsf219651 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr1024290 | ||||||||
| Expr1032418 | |||||||||
| Expr1146716 | |||||||||
| Expr2015907 | |||||||||
| Expr2034140 | |||||||||
| Construct_product | WBCnstr00007260 | ||||||||
| Regulate_expr_cluster | WBPaper00053308:NMD(-)_downregulated_SMD-2_non-binding_ClassIV | ||||||||
| WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII | |||||||||
| Antibody | WBAntibody00000757 | ||||||||
| WBAntibody00002206 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (70) | |||||||||
| Map_info | Map | I | Position | 1.48161 | Error | 0.009583 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C48B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| F56F2 | |||||||||
| Mapping_data | 2_point | 328 | |||||||
| Multi_point | 204 | ||||||||
| 1889 | |||||||||
| 1890 | |||||||||
| 2089 | |||||||||
| 5509 | |||||||||
| Reference (133) | |||||||||
| Remark | [Pulak R] n2088 may be a deficiency, nDf48 | ||||||||
| Sequence connection from [O'Connor SL, Anderson RP] based on EMBL:AF149821 | |||||||||
| Method | Gene |
