WormBase Tree Display for Gene: WBGene00000476

WBGene00000476 Evidence: Paper_evidence: WBPaper00005226
  SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: cfi-1 Person_evidence: WBPerson576
      Sequence_name: T23D8.8
      Molecular_name: T23D8.8
        T23D8.8.1
        CE31068
      Other_name: CELE_T23D8.8 Accession_evidence: NDB BX284601
      Public_name: cfi-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cfi
    Allele (65)
    Strain: WBStrain00029686
      WBStrain00029777
      WBStrain00030512
      WBStrain00050734
      WBStrain00050880
      WBStrain00050881
      WBStrain00052003
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (45)
    Paralog: WBGene00002717 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Concise_description: cfi-1 encodes a DNA-binding protein containing an AT-rich interaction domain (ARID) that affects differentiation of the URA sensory neurons, AVD, and PVC interneurons; acts downstream of UNC-86 and LIN-32 in controlling URA and IL2 cell fate, and is expressed in some neurons and muscle cells. Paper_evidence: WBPaper00005226
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; neuron fate specification; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in ganglia; head muscle; neurons; and pharyngeal muscle cell. Is an ortholog of human ARID3B (AT-rich interaction domain 3B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T23D8.8
    Corresponding_CDS_history: T23D8.8:wp80
    Corresponding_transcript: T23D8.8.1
    Other_sequence (11)
    Associated_feature (13)
    Transcription_factor: WBTranscriptionFactor001067
  Experimental_info: RNAi_result: WBRNAi00081569 Inferred_automatically: RNAi_primary
      WBRNAi00004283 Inferred_automatically: RNAi_primary
      WBRNAi00053925 Inferred_automatically: RNAi_primary
      WBRNAi00035861 Inferred_automatically: RNAi_primary
      WBRNAi00075505 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1870
      Expr7902
      Expr13470
      Expr1018393
      Expr1030278
      Expr1157470
      Expr2009936
      Expr2028176
    Drives_construct: WBCnstr00012979
      WBCnstr00037509
    Construct_product: WBCnstr00018602
      WBCnstr00037509
      WBCnstr00038777
      WBCnstr00038779
    Antibody: WBAntibody00000501
    Microarray_results (21)
    Expression_cluster (130)
    Interaction: WBInteraction000003557
      WBInteraction000003558
      WBInteraction000009400
      WBInteraction000009789
      WBInteraction000029267
      WBInteraction000033328
      WBInteraction000034539
      WBInteraction000037439
      WBInteraction000039622
      WBInteraction000039975
      WBInteraction000040238
      WBInteraction000040400
      WBInteraction000040460
      WBInteraction000041761
      WBInteraction000042481
      WBInteraction000043321
      WBInteraction000043324
      WBInteraction000043327
      WBInteraction000043916
      WBInteraction000046110
      WBInteraction000046385
      WBInteraction000047038
      WBInteraction000047279
      WBInteraction000047353
      WBInteraction000048455
      WBInteraction000048479
      WBInteraction000048694
      WBInteraction000049620
      WBInteraction000049629
      WBInteraction000050497
      WBInteraction000115369
      WBInteraction000165985
      WBInteraction000166427
      WBInteraction000197197
      WBInteraction000205395
      WBInteraction000205604
      WBInteraction000216773
      WBInteraction000228776
      WBInteraction000271125
      WBInteraction000342425
      WBInteraction000352087
      WBInteraction000355707
      WBInteraction000424838
      WBInteraction000501776
      WBInteraction000501777
      WBInteraction000501778
      WBInteraction000501779
      WBInteraction000501780
      WBInteraction000505354
      WBInteraction000520884
      WBInteraction000534666
  Map_info: Map: I Position: 4.15343 Error: 0.021973
    Positive: Positive_clone: K07A5
        T23D8 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Negative_clone: C03C11
        T24D1
    Mapping_data: Multi_point: 4062
        5650
      Pos_neg_data: 10677
  Reference (18)
  Remark: Data extracted from cgc5226. Negative method is cosmid rescue. Postitive method is cosmid rescue [030108 ck1]
  Method: Gene