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WormBase Tree Display for Gene: WBGene00014046

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Name Class

WBGene00014046SMapS_parentSequenceZK666
IdentityVersion2
NameCGC_nameclec-60Person_evidenceWBPerson261
WBPerson655
Sequence_nameZK666.6
Molecular_nameZK666.6
ZK666.6.1
CE02391
Other_nameCELE_ZK666.6Accession_evidenceNDBBX284602
Public_nameclec-60
DB_infoDatabaseAceViewgene2K770
WormQTLgeneWBGene00014046
WormFluxgeneWBGene00014046
NDBlocus_tagCELE_ZK666.6
PanthergeneCAEEL|WormBase=WBGene00014046|UniProtKB=Q23564
familyPTHR31024
NCBIgene191384
RefSeqproteinNM_063858.4
TREEFAMTREEFAM_IDTF317104
TrEMBLUniProtAccQ23564
UniProt_GCRPUniProtAccQ23564
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
228 Sep 2005 17:40:12WBPerson2970Name_changeCGC_nameclec-60
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (24)
StrainWBStrain00004708
RNASeq_FPKM (74)
GO_annotation00078945
Ortholog (60)
Paralog (13)
Structured_descriptionConcise_descriptionclec-60 encodes a C-type lectin protein with no obvious non-nematode orthologs; clec-60 appears to play a role in the innate immune respone to some bacterial pathogens, including Microbacterium nematophilum and Salmonella enterica; clec-60 transcription is induced 6.6-fold by infection with M. nematophilum, making it one of the most strongly infection-responsive genes (second only to tts-1); CLEC-60 is expressed throughout the larval intestine, with expression continuing in the adult adult primarily in the posterior intestinal cells int8 and int9; CLEC-60 contains an N-terminal von Willebrand factor type A domain and a C-terminal C-type lectin domain.Paper_evidenceWBPaper00027722
WBPaper00044718
Person_evidenceWBPerson426
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated19 Feb 2014 00:00:00
Automated_descriptionInvolved in defense response to Gram-positive bacterium. Expressed in intestine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK666.6
Corresponding_transcriptZK666.6.1
Other_sequence (5)
Associated_featureWBsf989355
WBsf223790
Experimental_infoRNAi_resultWBRNAi00078250Inferred_automaticallyRNAi_primary
WBRNAi00110396Inferred_automaticallyRNAi_primary
WBRNAi00076894Inferred_automaticallyRNAi_primary
WBRNAi00110394Inferred_automaticallyRNAi_primary
WBRNAi00022114Inferred_automaticallyRNAi_primary
WBRNAi00106798Inferred_automaticallyRNAi_primary
WBRNAi00038403Inferred_automaticallyRNAi_primary
WBRNAi00110395Inferred_automaticallyRNAi_primary
WBRNAi00082508Inferred_automaticallyRNAi_primary
WBRNAi00059632Inferred_automaticallyRNAi_primary
Expr_patternExpr3949
Expr12635
Expr1025412
Expr1163042
Expr2010193
Drives_constructWBCnstr00011773
WBCnstr00015098
WBCnstr00022342
WBCnstr00029353
Construct_productWBCnstr00029353
Microarray_results (18)
Expression_cluster (316)
InteractionWBInteraction000196640
WBInteraction000203686
WBInteraction000215464
WBInteraction000225240
WBInteraction000229770
WBInteraction000237018
WBInteraction000239357
WBInteraction000252110
WBInteraction000254890
WBInteraction000256638
WBInteraction000258240
WBInteraction000288326
WBInteraction000296256
WBInteraction000313571
WBInteraction000317717
WBInteraction000320383
WBInteraction000321611
WBInteraction000322427
WBInteraction000334705
WBInteraction000335162
WBInteraction000336655
WBInteraction000343840
WBInteraction000346692
WBInteraction000346906
WBInteraction000348442
WBInteraction000349481
WBInteraction000356316
WBInteraction000361074
WBInteraction000363641
WBInteraction000366375
WBInteraction000367583
WBInteraction000368598
WBInteraction000369695
WBInteraction000375566
WBInteraction000376414
WBInteraction000381892
WBInteraction000382463
WBInteraction000391437
WBInteraction000392884
WBInteraction000392991
WBInteraction000401870
WBInteraction000402383
WBInteraction000409530
WBInteraction000416197
WBInteraction000418066
WBInteraction000429311
WBInteraction000431780
WBInteraction000440089
WBInteraction000445909
WBInteraction000447606
WBInteraction000450316
WBInteraction000456076
WBInteraction000457136
WBInteraction000458226
WBInteraction000459029
WBInteraction000462393
WBInteraction000503608
WBInteraction000503609
WBInteraction000503610
WBInteraction000504130
WBInteraction000504900
WBInteraction000505020
WBInteraction000505170
WBInteraction000518580
WBInteraction000518665
WBInteraction000518741
WBInteraction000518801
WBInteraction000521314
WBInteraction000525216
WBInteraction000541044
WBInteraction000541047
WBInteraction000541052
WBInteraction000541054
WBInteraction000541060
WBInteraction000541068
WBInteraction000541070
WBInteraction000541072
WBInteraction000544074
WBInteraction000544076
WBInteraction000544078
WBInteraction000544786
WBProcessWBbiopr:00000008
WBbiopr:00000039
Map_infoMapIIPosition2.80209Error0.031689
PositivePositive_cloneZK666Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (33)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene