WormBase Tree Display for Gene: WBGene00000793
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WBGene00000793 | Evidence | Accession_evidence | EMBL | AB081595 | |||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y41C4A | ||||||
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 3M781 | |||||
WormQTL | gene | WBGene00000793 | |||||||
WormFlux | gene | WBGene00000793 | |||||||
NDB | locus_tag | CELE_Y41C4A.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000793|UniProtKB=D0Z5N1 | |||||||
family | PTHR45879 | ||||||||
NCBI | gene | 176597 | |||||||
RefSeq | protein | NM_001027688.6 | |||||||
NM_001027691.4 | |||||||||
NM_001027690.4 | |||||||||
NM_001268206.3 | |||||||||
NM_001027689.3 | |||||||||
NM_001027692.4 | |||||||||
NM_001268207.3 | |||||||||
SwissProt | UniProtAcc | Q9U2I0 | |||||||
TREEFAM | TREEFAM_ID | TF106464 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2I0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | crh | ||||||||
Allele (986) | |||||||||
Strain | WBStrain00040751 | ||||||||
WBStrain00035398 | |||||||||
WBStrain00055558 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00000222 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00002783 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016162 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | crh-1 encodes a homolog of the cyclic AMP-response element binding protein (CREB); crh-1 is involved in the transcription of CRE-sequence dependant genes activated by a CaM kinase cascade; crh-1 is required in the bilateral thermosensory neuron AFD, for a memory-related behaviour and for response to tap (nonlocalized mechanosensory stimulation) and tap habituation; crh-1 appears to be ubiquitously expressed. | Paper_evidence | WBPaper00005563 | |||||
WBPaper00029055 | |||||||||
WBPaper00039855 | |||||||||
WBPaper00039821 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson324 | |||||||||
Date_last_updated | 02 Dec 2013 00:00:00 | ||||||||
Automated_description | Enables identical protein binding activity and transcription coactivator binding activity. Involved in determination of adult lifespan; intracellular signal transduction; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in several structures, including germ line; gonad; head ganglion; intestine; and neurons. Human ortholog(s) of this gene implicated in Pick's disease and schizophrenia. Is an ortholog of human ATF1 (activating transcription factor 1); CREB1 (cAMP responsive element binding protein 1); and CREM (cAMP responsive element modulator). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9976 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2345) | ||||
DOID:0050741 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2345) | ||||||
DOID:11870 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2345) | ||||||
DOID:9975 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2345) | ||||||
DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2345) | ||||||
Molecular_info | Corresponding_CDS | Y41C4A.4a | |||||||
Y41C4A.4b | |||||||||
Y41C4A.4c | |||||||||
Y41C4A.4d | |||||||||
Y41C4A.4e | |||||||||
Y41C4A.4f | |||||||||
Y41C4A.4g | |||||||||
Corresponding_CDS_history | Y41C4A.4a:wp89 | ||||||||
Y41C4A.4b:wp89 | |||||||||
Y41C4A.4c:wp89 | |||||||||
Corresponding_transcript | Y41C4A.4a.1 | ||||||||
Y41C4A.4b.1 | |||||||||
Y41C4A.4c.1 | |||||||||
Y41C4A.4d.1 | |||||||||
Y41C4A.4e.1 | |||||||||
Y41C4A.4f.1 | |||||||||
Y41C4A.4g.1 | |||||||||
Other_sequence (69) | |||||||||
Associated_feature (43) | |||||||||
Transcription_factor | WBTranscriptionFactor000257 | ||||||||
Experimental_info | RNAi_result | WBRNAi00056358 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00095782 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036995 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006490 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116042 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115794 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056360 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087890 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006495 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00008257 | ||||||||
WBCnstr00012859 | |||||||||
WBCnstr00038398 | |||||||||
WBCnstr00038399 | |||||||||
WBCnstr00041558 | |||||||||
Construct_product (13) | |||||||||
Regulate_expr_cluster | WBPaper00038172:crh-1null_down_regulated | ||||||||
WBPaper00038172:crh-1null_up_regulated | |||||||||
WBPaper00059816:crh-1(n3315)_downrgulated | |||||||||
WBPaper00059816:crh-1(n3315)_uprgulated | |||||||||
WBPaper00062440:crh-1(n3315)_downregulated | |||||||||
WBPaper00062440:crh-1(n3315)_upregulated | |||||||||
WBPaper00062440:crh-1(syb385)_downregulated | |||||||||
WBPaper00062440:crh-1(syb385)_upregulated | |||||||||
Antibody | WBAntibody00001853 | ||||||||
Microarray_results | SMD_Y41C4A.3 | ||||||||
SMD_Y41C4A.4 | |||||||||
181128_at | |||||||||
189423_s_at | |||||||||
A_12_P104490 | |||||||||
A_12_P110459 | |||||||||
A_12_P111958 | |||||||||
A_12_P112504 | |||||||||
A_12_P120246 | |||||||||
A_12_P131910 | |||||||||
A_12_P131911 | |||||||||
A_12_P131912 | |||||||||
A_12_P131913 | |||||||||
A_12_P131914 | |||||||||
A_12_P159250 | |||||||||
Aff_Y41C4A.3 | |||||||||
Aff_Y41C4A.4 | |||||||||
GPL13394_WBGene00000793 | |||||||||
GPL13914_Y41C4A.4 | |||||||||
GPL14144_Y41C4A.4d_794-853_0.917_7_A | |||||||||
GPL14144_Y41C4A.4d_907-966_0.821_29_B | |||||||||
GPL14144_Y41C4A.4d_94-153_0.907_9_C | |||||||||
GPL19516_CGZ0013124 | |||||||||
GPL19516_CGZ0045458 | |||||||||
GPL19516_CGZ0045459 | |||||||||
GPL19516_CGZ0045460 | |||||||||
GPL19516_CGZ0045461 | |||||||||
GPL19516_CGZ0045462 | |||||||||
GPL19516_CGZ0045463 | |||||||||
GPL19516_CGZ0045464 | |||||||||
GPL21109_Cat_Y41C4A.4d | |||||||||
GPL21109_Y41C4A.4a | |||||||||
GPL21109_Y41C4A.4c | |||||||||
GPL3518_CE20243 | |||||||||
GPL3518_CE32253 | |||||||||
GPL8304_CE_WBGene00000793_A | |||||||||
GPL8304_CE_WBGene00000793_B | |||||||||
GPL8673_Y41C4A_4aP00112 | |||||||||
GPL8673_Y41C4A_4aP00408 | |||||||||
GPL8673_Y41C4A_4aP00729 | |||||||||
GPL8673_Y41C4A_4bP00112 | |||||||||
GPL8673_Y41C4A_4bP00414 | |||||||||
GPL8673_Y41C4A_4bP00735 | |||||||||
GPL8673_Y41C4A_4cP00001 | |||||||||
GPL8673_Y41C4A_4cP00003 | |||||||||
GPL8673_Y41C4A_4cP00696 | |||||||||
GPL8673_Y41C4A_4dP00053 | |||||||||
GPL8673_Y41C4A_4dP00130 | |||||||||
GPL8673_Y41C4A_4dP00747 | |||||||||
GPL8673_Y41C4A_4eP00055 | |||||||||
GPL8673_Y41C4A_4eP00351 | |||||||||
GPL8673_Y41C4A_4eP00672 | |||||||||
GPL9450_Y41C4A.3 | |||||||||
GPL9450_Y41C4A.4b | |||||||||
GPL9450_Y41C4A.4c | |||||||||
GPL9450_Y41C4A.4d | |||||||||
cea2.3.28253 | |||||||||
cea2.d.06625 | |||||||||
cea2.d.43706 | |||||||||
cea2.d.43717 | |||||||||
cea2.i.21805 | |||||||||
Expression_cluster (111) | |||||||||
Interaction (63) | |||||||||
WBProcess | WBbiopr:00000121 | ||||||||
Map_info | Map | III | Position | 11.752 | Error | 0.036866 | |||
Positive | Positive_clone | Y41C4A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4239 | |||||||
4497 | |||||||||
Pseudo_map_position | |||||||||
Reference (94) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |