WormBase Tree Display for Gene: WBGene00000647

WBGene00000647 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: Y49F6B
  Identity: Version: 1
    Name: CGC_name: col-71 Person_evidence: WBPerson345
      Sequence_name: Y49F6B.10
      Molecular_name: Y49F6B.10
        Y49F6B.10.1
        CE25334
      Other_name: Y49F6B.p Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y49F6B.10 Accession_evidence: NDB BX284602
      Public_name: col-71
    DB_info: Database: AceView gene 2D790
        WormQTL gene WBGene00000647
        WormFlux gene WBGene00000647
        NDB locus_tag CELE_Y49F6B.10
        Panther gene CAEEL|WormBase=WBGene00000647|UniProtKB=Q9N4U2
          family PTHR24023
        NCBI gene 173695
        RefSeq protein NM_062161.5
        SwissProt UniProtAcc Q9N4U2
        UniProt_GCRP UniProtAcc Q9N4U2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (107)
    RNASeq_FPKM (74)
    GO_annotation: 00094909
      00094910
      00094911
      00094912
      00094913
      00094914
      00107645
    Ortholog: WBGene00067435 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037305 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163498 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00098949 Pristionchus pacificus From_analysis: OMA
      WBGene00139416 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125701 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00228353 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12530 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6549 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15857 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20268 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g20269 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20927 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g23098 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7728 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12604 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1772 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4427 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_04025.g18553 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-col-71 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16921 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03696.g31007 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_006937 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g5584 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20037700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4009 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00212469 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237999 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288383 Trichuris muris From_analysis: WormBase-Compara
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in membrane and nucleus. Expressed in hyp7 syncytium and seam cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y49F6B.10
    Corresponding_transcript: Y49F6B.10.1
    Other_sequence: DV019696.1
      EG025793.1
      CJC05350_1
      CSC01977_1
      CBC00435_1
      X89450.1
      FD516848.1
    Associated_feature: WBsf649971
      WBsf981180
      WBsf987267
      WBsf222865
      WBsf222866
  Experimental_info (6)
  Map_info: Map: II Position: -6.25066 Error: 0.000647
    Positive: Positive_clone: Y49F6B Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00043837
    WBPaper00044857
    WBPaper00055090
    WBPaper00059205
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene