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WormBase Tree Display for Gene: WBGene00015497

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Name Class

WBGene00015497EvidencePaper_evidenceWBPaper00003754
SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion2
NameCGC_namenhr-76Person_evidenceWBPerson573
Sequence_nameC05G6.1
Molecular_nameC05G6.1
C05G6.1.1
CE37476
Other_nameCELE_C05G6.1Accession_evidenceNDBBX284604
Public_namenhr-76
DB_infoDatabaseAceViewgene4B385
WormQTLgeneWBGene00015497
WormFluxgeneWBGene00015497
NDBlocus_tagCELE_C05G6.1
PanthergeneCAEEL|WormBase=WBGene00015497|UniProtKB=Q65CM0
familyPTHR24083
NCBIgene182276
RefSeqproteinNM_067560.6
SwissProtUniProtAccQ65CM0
TREEFAMTREEFAM_IDTF317760
UniProt_GCRPUniProtAccQ65CM0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
230 Nov 2004 16:48:19WBPerson2970EventAcquires_mergeWBGene00003666
Acquires_mergeWBGene00003666
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
LaboratoryPY
Allele (158)
RNASeq_FPKM (74)
GO_annotation (20)
OrthologWBGene00068316Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040082Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00154833Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134540Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192427Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00155707Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00040112Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00223361Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10845Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g424Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8601Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10909Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7609Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7987Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9056Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1932Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24634Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10508Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00143.g5507Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nhr-76Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8838Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01207.g19258Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11676Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015113Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03042Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18015Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40063600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9538Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00082687Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00082688Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00247746Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277614Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281113Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263318Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (250)
Structured_descriptionAutomated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway; positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory gland cell; intestine; pharynx; and vulval muscle.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC05G6.1
Corresponding_CDS_historyC05G6.1:wp102
C05G6.1:wp131
Corresponding_transcriptC05G6.1.1
Other_sequenceGO250325.1
CJC14094_1
Associated_feature (15)
Gene_product_binds (288)
Transcription_factorWBTranscriptionFactor000610
Experimental_infoRNAi_result (11)
Expr_patternExpr1183
Expr11341
Expr1015484
Expr1036630
Expr1143885
Expr1200056
Expr2014227
Expr2032468
Drives_constructWBCnstr00010135
WBCnstr00018784
WBCnstr00028801
Construct_productWBCnstr00010135
WBCnstr00016707
WBCnstr00028801
Microarray_results (24)
Expression_cluster (134)
Interaction (36)
Map_infoMapIVPosition-23.7312Error0.06052
PositivePositive_cloneC05G6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point (2)
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00028802
WBPaper00044293
WBPaper00051774
WBPaper00061738
WBPaper00062388
WBPaper00064415
WBPaper00064719
WBPaper00065847
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene