WormBase Tree Display for Gene: WBGene00017816

WBGene00017816 SMap: S_parent: Sequence: F26B1
  Identity: Version: 2
    Name: CGC_name: hrpk-1 Person_evidence: WBPerson2506
      Sequence_name: F26B1.2
      Molecular_name (19)
      Other_name: CELE_F26B1.2 Accession_evidence: NDB BX284601
      Public_name: hrpk-1
    DB_info: Database: AceView gene 1G895
        WormQTL gene WBGene00017816
        WormFlux gene WBGene00017816
        NDB locus_tag CELE_F26B1.2
        Panther gene CAEEL|WormBase=WBGene00017816|UniProtKB=P91277
          family PTHR10288
        NCBI gene 172330
        RefSeq protein NM_001392429.1
            NM_001392433.1
            NM_001392432.1
            NM_001392431.1
            NM_170880.6
        SwissProt UniProtAcc P91277
        TREEFAM TREEFAM_ID TF316335
        UniProt_GCRP UniProtAcc P91277
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Jan 2016 15:29:00 WBPerson2970 Name_change: CGC_name: hrpk-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hrpk
    Allele (36)
    Possibly_affected_by: WBVar02152928
    Strain: WBStrain00037915
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog: WBGene00064326 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033516 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00121076 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00094439 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00152498 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223868 Brugia malayi From_analysis: WormBase-Compara
      WBGene00229819 Brugia malayi From_analysis: WormBase-Compara
      WBGene00233124 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9051 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2634 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6180 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4199 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8300 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7711 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7829 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21194 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20875 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5801 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9414 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00177.g6274 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_15841.g25184 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hrpk-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20372 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00087.g3875 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18982 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002740 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07678 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09879 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12036 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16150 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10323700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1129 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237962 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00239762 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00240584 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259973 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287819 Trichuris muris From_analysis: WormBase-Compara
      WBGene00288309 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000437 Saccharomyces cerevisiae From_analysis: Hieranoid
            Inparanoid
            OrthoInspector
            Panther
      FB:FBgn0267791 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1923 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1926 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:5044 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      MGI:99894 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      RGD:71058 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2323128 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00003978 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00007534 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010908 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013347 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015557 Caenorhabditis elegans From_analysis: Panther
      WBGene00016489 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019692 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022738 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022737 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable mRNA binding activity. Involved in DNA damage response and embryo development. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including hypodermal cell; intestinal cell; muscle cell; neurons; and oocyte. Human ortholog(s) of this gene implicated in Raynaud disease; colorectal cancer; and prostate cancer. Is an ortholog of human HNRNPK (heterogeneous nuclear ribonucleoprotein K). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5044)
      DOID:10283 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5044)
      DOID:10300 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5044)
  Molecular_info: Corresponding_CDS: F26B1.2a
      F26B1.2b
      F26B1.2c
      F26B1.2d
      F26B1.2e
    Corresponding_CDS_history: F26B1.2b:wp90
    Corresponding_transcript: F26B1.2a.1
      F26B1.2b.1
      F26B1.2b.2
      F26B1.2b.3
      F26B1.2b.4
      F26B1.2c.1
      F26B1.2d.1
      F26B1.2d.2
      F26B1.2e.1
    Other_sequence (71)
    Associated_feature: WBsf643356
      WBsf983891
      WBsf983892
      WBsf217794
      WBsf217795
      WBsf217796
      WBsf217797
  Experimental_info: RNAi_result: WBRNAi00115203 Inferred_automatically: RNAi_primary
      WBRNAi00077903 Inferred_automatically: RNAi_primary
      WBRNAi00111647 Inferred_automatically: RNAi_primary
      WBRNAi00045597 Inferred_automatically: RNAi_primary
      WBRNAi00116469 Inferred_automatically: RNAi_primary
      WBRNAi00031429 Inferred_automatically: RNAi_primary
      WBRNAi00003476 Inferred_automatically: RNAi_primary
      WBRNAi00007753 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14889
      Expr14890
      Expr14891
      Expr14892
      Expr1011487
      Expr1037656
      Expr1149507
      Expr2012603
      Expr2030839
    Drives_construct: WBCnstr00026993
    Construct_product: WBCnstr00026993
    Regulate_expr_cluster: WBPaper00058673:hrpk-1(tm5522)_downregulated_miRNA_L4
      WBPaper00058673:hrpk-1(tm5522)_upregulated_miRNA_L4
      WBPaper00058673:hrpk-1(zen17)_downregulated_miRNA_embryo
      WBPaper00058673:hrpk-1(zen17)_downregulated_miRNA_L4
      WBPaper00058673:hrpk-1(zen17)_upregulated_miRNA_embryo
      WBPaper00058673:hrpk-1(zen17)_upregulated_miRNA_L4
    Antibody: WBAntibody00002880
    Microarray_results (52)
    Expression_cluster (187)
    SAGE_tag: SAGE:ggcgttgaat Strand: Antisense
      SAGE:aagcgagagcacgataa Strand: Sense
        Unambiguously_mapped
      SAGE:tccaagtccc Strand: Sense
        Unambiguously_mapped
      SAGE:gccttcggac Strand: Antisense
      SAGE:aatgcgtatt Strand: Antisense
    Interaction (205)
  Map_info: Map: I Position: 0.985507
    Positive: Positive_clone: F26B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (12)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene