WormBase Tree Display for Gene: WBGene00019018

WBGene00019018 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: abts-3 Person_evidence: WBPerson2233
      Sequence_name: F57F10.1
      Molecular_name (16)
      Other_name: CELE_F57F10.1 Accession_evidence: NDB BX284602
      Public_name: abts-3
    DB_info: Database: AceView gene 2G447
        WormQTL gene WBGene00019018
        WormFlux gene WBGene00019018
        NDB locus_tag CELE_F57F10.1
        Panther gene CAEEL|WormBase=WBGene00019018|UniProtKB=A0A3B1E616
          family PTHR11453
        NCBI gene 174024
        RefSeq protein NM_062827.6
            NM_001368589.3
            NM_001368590.4
            NM_001381448.2
            NM_001381447.1
        TrEMBL UniProtAcc A0A3B1E616
            Q8MQ15
            A0A3B1E4W4
            G5EBE4
            Q3Y415
        UniProt_GCRP UniProtAcc A0A3B1E616
        OMIM gene 610206
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 19 Jan 2005 16:30:54 WBPerson2970 Name_change: CGC_name: abts-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: abts
    Allele (332)
    Strain: WBStrain00031387
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog: WBGene00054013 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025607 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00121262 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155558 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00194410 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00160874 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00152493 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155525 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00124619 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00051441 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00066611 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00134573 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00094530 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00234956 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12653 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10646 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13867 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1427 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12495 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27046 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1620 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3959 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11403 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g7296 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8634 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00719.g13667 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00839.g14500 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-abts-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16445 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02715.g27654 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04474 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006183 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12744 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g18949 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20125500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4694 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247529 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00108934 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265969 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290771 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302496 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005219 Saccharomyces cerevisiae From_analysis: Inparanoid
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-090313-183 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:16438 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2138987 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1310188 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00009920 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00009929 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019844 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: abts-3 encodes an anion transporter; abts-3 promoter gfp fusions are expressed in neurons and hypodermal cells in a pattern coincident with abts-1. Paper_evidence: WBPaper00025075
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 13 Dec 2007 00:00:00
      Automated_description: Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion homeostasis and transmembrane transport. Predicted to be located in basolateral plasma membrane. Expressed in hypodermis and neurons. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; congenital hereditary endothelial dystrophy of cornea; and corneal dystrophy-perceptive deafness syndrome. Is an ortholog of human SLC4A11 (solute carrier family 4 member 11). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0060649 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16438)
      DOID:11555 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16438)
      DOID:0111620 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16438)
  Molecular_info: Corresponding_CDS: F57F10.1a
      F57F10.1b
      F57F10.1c
      F57F10.1d
      F57F10.1e
    Corresponding_transcript: F57F10.1a.1
      F57F10.1b.1
      F57F10.1b.2
      F57F10.1c.1
      F57F10.1d.1
      F57F10.1e.1
    Other_sequence (27)
    Associated_feature (26)
  Experimental_info: RNAi_result: WBRNAi00015896 Inferred_automatically: RNAi_primary
      WBRNAi00048875 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3244
      Expr1023188
      Expr1038215
      Expr1152623
      Expr2009101
      Expr2027337
    Drives_construct: WBCnstr00011247
    Microarray_results (29)
    Expression_cluster (173)
    Interaction (24)
  Map_info: Map: II Position: -0.448445 Error: 0.008859
    Positive: Positive_clone: F57F10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4907
        5045
    Pseudo_map_position
  Reference: WBPaper00025075
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene