WormBase Tree Display for Gene: WBGene00019543

WBGene00019543 SMap: S_parent: Sequence: K08F11
  Identity: Version: 2
    Name: CGC_name: cif-1 Paper_evidence: WBPaper00029237
      Sequence_name: K08F11.3
      Molecular_name: K08F11.3
        K08F11.3.1
        CE11954
        K08F11.3.2
      Other_name: CELE_K08F11.3 Accession_evidence: NDB BX284604
      Public_name: cif-1
    DB_info: Database: AceView gene 4F472
        WormQTL gene WBGene00019543
        WormFlux gene WBGene00019543
        NDB locus_tag CELE_K08F11.3
        Panther gene CAEEL|WormBase=WBGene00019543|UniProtKB=Q94261
          family PTHR15350
        NCBI gene 177236
        RefSeq protein NM_068217.7
        SwissProt UniProtAcc Q94261
        TREEFAM TREEFAM_ID TF106148
        UniProt_GCRP UniProtAcc Q94261
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 13 Apr 2007 16:02:30 WBPerson2970 Name_change: CGC_name: cif-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cif
    Allele (49)
    Strain: WBStrain00036432
    RNASeq_FPKM (74)
    GO_annotation (21)
    Contained_in_operon: CEOP4140
    Ortholog: WBGene00062805 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00024927 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00145294 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119516 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00225193 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8443 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g8444 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2981 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13732 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13911 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7048 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21561 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g3595 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2133 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_18978.g26115 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g14590 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold589.g4995 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00846.g16049 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02520 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13906 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40128020 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10254 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245482 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00305054 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262840 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302228 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0033902 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-2643 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:24460 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1351744 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1565840 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Structured_description: Automated_description: Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is an ortholog of human EIF3M (eukaryotic translation initiation factor 3 subunit M). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K08F11.3
    Corresponding_transcript: K08F11.3.1
      K08F11.3.2
    Other_sequence (38)
    Associated_feature: WBsf667900
      WBsf996375
      WBsf996376
      WBsf996377
      WBsf1017302
      WBsf1017303
      WBsf229998
      WBsf229999
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1028784
      Expr1038446
      Expr1154015
      Expr2010013
      Expr2028254
    Microarray_results (23)
    Expression_cluster (128)
    Interaction (122)
  Map_info: Map: IV Position: 0.68613 Error: 0.002646
    Positive: Positive_clone: K08F11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029237
    WBPaper00038491
    WBPaper00048416
    WBPaper00049828
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene