WormBase Tree Display for Gene: WBGene00020480

WBGene00020480 SMap: S_parent: Sequence: T13C2
  Identity: Version: 2
    Name: CGC_name: ssup-72 Person_evidence: WBPerson5509
      Sequence_name: T13C2.4
      Molecular_name: T13C2.4
        T13C2.4.1
        CE39774
        T13C2.4.2
      Other_name: CELE_T13C2.4 Accession_evidence: NDB BX284602
      Public_name: ssup-72
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Nov 2008 17:10:59 WBPerson2970 Name_change: CGC_name: ssup-72
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ssup
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation (18)
    Ortholog: WBGene00054173 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032320 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00147213 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120693 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226025 Brugia malayi From_analysis: WormBase-Compara
      WBGene00231305 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6502 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1411 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15522 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1242 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17428 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18171 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g3970 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3965 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6504 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3877 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8467 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00375.g9970 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ssup-72 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12081 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00300.g8984 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13672 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006347 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04769 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19568 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20270100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4860 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246901 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00273976 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00256904 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288253 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005166 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0031054 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1689 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25016 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43627 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43622 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43624 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43621 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43626 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:43623 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916241 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307854 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in regulation of locomotion. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Expressed in hypodermis; intestine; and nervous system. Is an ortholog of several human genes including SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase); SSU72L3 (SSU72 like 3); and SSU72L6 (SSU72 like 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T13C2.4
    Corresponding_CDS_history: T13C2.4:wp100
      T13C2.4:wp154
    Corresponding_transcript: T13C2.4.1
      T13C2.4.2
    Other_sequence (35)
    Associated_feature: WBsf221508
  Experimental_info: RNAi_result: WBRNAi00053256 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12610
      Expr1019463
      Expr1038929
      Expr1156838
      Expr2016950
      Expr2035098
    Drives_construct: WBCnstr00022448
      WBCnstr00025110
    Construct_product: WBCnstr00022448
      WBCnstr00025110
    Microarray_results (12)
    Expression_cluster (104)
    Interaction (76)
  Map_info: Map: II Position: 0.10448 Error: 0.004475
    Positive: Positive_clone: T13C2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00048229
    WBPaper00048853
    WBPaper00050654
    WBPaper00055090
    WBPaper00059048
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene