WormBase Tree Display for Gene: WBGene00034102

WBGene00034102 SMap: S_parent: Sequence: cb25.fpc2976
  Identity: Version: 2
    Name: CGC_name: Cbr-nft-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG13323
      Molecular_name: CBG13323
        CBG13323.1
        CBP35668
      Other_name: CBG_13323 Accession_evidence: NDB HE601226
      Public_name: Cbr-nft-1
    DB_info: Database: NDB locus_tag CBG_13323
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-nft-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nft
    RNASeq_FPKM: WBls:0000002 10.4774 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        14.5029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.32184 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        8.60739 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        11.5551 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        12.3847 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        18.1066 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 3.65841 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        5.53772 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        7.41703 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        2.54567 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        4.54037 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 3.20327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        3.61836 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        4.03344 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        10.3248 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        2.79312 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        3.50373 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        4.77167 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 0.784386 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        3.06723 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        4.29093 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        9.02116 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        12.7536 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        6.0442 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        6.40659 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 17.1143 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.658 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        11.6836 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        12.9003 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        14.1171 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        15.6719 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        5.15932 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 12.88 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        14.6773 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        14.7598 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        14.8422 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        15.1839 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        18.3359 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        16.5891 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        17.4866 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        19.0064 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        25.1778 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 2.96998 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        3.17494 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        4.73677 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        4.86269 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.94442 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        7.48736 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        5.16159 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.34059 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        6.6561 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 8.60739 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        8.92994 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        8.81427 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        9.46937 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00137570
    Ortholog: WBGene00003594 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063000 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00157786 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00182672 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g6021 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10636 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6374 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12954 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22470 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21862 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3420 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4746 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7030 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20659 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00730.g13760 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nft-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold126.g579 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00510.g12289 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21005 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010190 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g3935 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30084900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00234976 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g9124 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241771 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277162 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263301 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00295081 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00025639 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026431 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034097 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in nitrogen compound metabolic process. Is an ortholog of C. elegans nft-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG13323
    Corresponding_CDS_history: CBG13323:bp194
    Corresponding_transcript: CBG13323.1
    Other_sequence (40)
  Experimental_info: Expr_pattern: Expr1058247
    Microarray_results: GPL8303_CB6_WBGene00034102_A
      GPL14143_CBG13323_1220-1279_0.876_21_B
  Method: Gene