WormBase Tree Display for Gene: WBGene00035859

WBGene00035859 SMap: S_parent: Sequence: cb25.fpc4030a2
  Identity: Version: 2
    Name: CGC_name: Cbr-xpd-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG15713
      Molecular_name: CBG15713
        CBG15713.1
        CBP03819
      Other_name: CBG_15713 Accession_evidence: NDB HE600979
      Public_name: Cbr-xpd-1
    DB_info: Database: NDB locus_tag CBG_15713
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:05 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Jul 2014 15:54:07 WBPerson2970 Name_change: CGC_name: Cbr-xpd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: xpd
    Allele: WBVar00002894
      WBVar00002889
    RNASeq_FPKM: WBls:0000002 13.2997 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        17.6805 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        19.5053 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        20.2364 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        15.0424 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        17.021 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        17.2738 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 18.4369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        21.796 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        25.1552 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        20.0701 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        21.2207 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 11.0602 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        11.1213 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        11.1823 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        10.0418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        10.7352 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        11.2406 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        13.1837 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 11.1868 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.41245 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        4.01079 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        5.53668 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        5.53948 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        5.91955 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        7.06817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 9.42804 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.3153 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        11.1608 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        11.4145 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        11.6682 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        14.4462 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        3.98611 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 18.572 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        30.0292 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        33.6727 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        33.7939 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        33.9152 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        33.9571 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        22.6371 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        22.6893 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        27.5739 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        28.181 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 18.6298 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        18.9893 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        19.5038 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        20.0239 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        20.3494 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        24.6 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        19.7638 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        20.9168 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        23.7539 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 13.2997 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        15.4411 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        13.8729 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        15.6056 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00139287
      00139288
      00139289
      00139290
      00139291
      00139292
      00139293
      00139294
      00139295
    Ortholog: WBGene00021752 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00065373 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140245 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00101686 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g4880 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9202 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13019 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18619 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22547 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2544 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9682 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4404 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8601 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1617 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00386.g10115 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00386.g10116 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_12726.g23904 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-xpd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16748 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06383.g36459 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18647 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011787 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03657 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15337 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g3251 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g3252 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30325910 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00227973 Brugia malayi From_analysis: WormBase-Compara
      chrIII_pilon.g6739 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00133488 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00245151 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262372 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292208 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00025337 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037830 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038895 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042796 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be involved in nucleotide-excision repair. Predicted to be located in nucleus. Is an ortholog of C. elegans xpd-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG15713
    Corresponding_CDS_history: CBG15713:bp194
    Corresponding_transcript: CBG15713.1
    Other_sequence (40)
  Experimental_info: Expr_pattern: Expr1052371
    Microarray_results: GPL8303_CB6_WBGene00035859_A
      GPL8303_CB6_WBGene00035859_B
      GPL14143_CBG15713_1259-1318_0.891_6_C
      GPL14143_CBG15713_1554-1613_0.909_2_B
      GPL14143_CBG15713_1670-1729_0.908_3_A
  Method: Gene