WormBase Tree Display for Gene: WBGene00055829

WBGene00055829 SMap: S_parent: Sequence: Crem_Contig12
  Identity: Version: 3
    Name: CGC_name: Cre-sbsp-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE04627
      Molecular_name: CRE04627
        CRE04627.1
        RP05931
      Other_name: cr01.sctg5.wum.536
      Public_name: Cre-sbsp-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:58 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE04627
                Other_name: cr01.sctg5.wum.536
        3 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cre-sbsp-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sbsp
    RNASeq_FPKM: WBls:0000004 1.786 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        2.23547 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        2.68494 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.674475 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        5.64205 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        6.62252 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        7.0792 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        7.53588 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        7.73532 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
      WBls:0000038 0.409776 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.64951 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        3.0515 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        4.48726 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 5.25176 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        5.81163 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        6.77459 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        6.77473 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        6.77488 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        6.87719 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        7.59107 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        9.05922 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 (11)
      WBls:0000101 4.93714 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        5.45582 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    Ortholog: WBGene00011269 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037749 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00132105 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00115083 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00193806 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225657 Brugia malayi From_analysis: WormBase-Compara
      WBGene00245128 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g5002 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7193 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8298 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18580 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22589 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21117 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12189 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7658 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11376 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g15777 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g385 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-R17.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold628.g7286 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00257.g8110 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11467 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010392 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11648 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9946 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30111000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8946 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00259791 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285922 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Somatomedin-B and thrombospondin type-1 domain-containing protein; Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Somatomedin B domain; and Somatomedin B-like domain superfamily. Is an ortholog of C. elegans sbsp-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE04627
    Corresponding_transcript: CRE04627.1
    Other_sequence: FC540457.1
      JO469447.1
      ACC14698_1
      JI173426.1
      FC548848.1
  Experimental_info: Expr_pattern: Expr1094714
    Microarray_results: GPL14146_CRE04627_1087-1146_0.951_4_C
      GPL14146_CRE04627_1233-1292_0.966_1_B
      GPL14146_CRE04627_955-1014_0.614_141_A
  Method: Gene