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WormBase Tree Display for Gene: WBGene00065095

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Name Class

WBGene00065095SMapS_parentSequenceCrem_Contig64
IdentityVersion3
NameCGC_nameCre-vab-1From_analysisInferred_from_orthology
Sequence_nameCRE17286
Molecular_nameCRE17286
CRE17286.1
RP36012
Other_namecr01.sctg57.wum.3
Public_nameCre-vab-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
221 Apr 2008 17:10:53WBPerson2970Name_changeCGC_nameCre-vab-1
303 Jul 2008 11:46:02WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE17286
Other_namecr01.sctg57.wum.3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
RNASeq_FPKMWBls:000000415.1567From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
15.879From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
16.6012From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (52)
WBls:000002711.2129From_analysisRNASeq.remanei.WBls:0000027.control_mean
12.1645From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
12.2807From_analysisRNASeq.remanei.WBls:0000027.control_median
12.3969From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
13.3878From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
6.90259From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:00000382.95364From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
3.35115From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
4.18702From_analysisRNASeq.remanei.WBls:0000038.control_mean
6.25626From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004112.5122From_analysisRNASeq.remanei.WBls:0000041.control_median
14.8608From_analysisRNASeq.remanei.WBls:0000041.control_mean
20.3041From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
24.3992From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
31.4593From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
3.96902From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
4.31282From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
4.72041From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063 (12)
WBls:00001015.4176From_analysisRNASeq.remanei.total_over_all_stages.control_median
8.54729From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00160365
00160366
00160367
00160368
00160369
00160370
00160371
OrthologWBGene00002205Caenorhabditis elegansFrom_analysisTreeFam
WBGene00002211Caenorhabditis elegansFrom_analysisTreeFam
WBGene00003374Caenorhabditis elegansFrom_analysisTreeFam
WBGene00006868Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00006895Caenorhabditis elegansFrom_analysisTreeFam
WBGene00008711Caenorhabditis elegansFrom_analysisTreeFam
WBGene00012270Caenorhabditis elegansFrom_analysisTreeFam
WBGene00012632Caenorhabditis elegansFrom_analysisTreeFam
WBGene00016416Caenorhabditis elegansFrom_analysisTreeFam
WBGene00020966Caenorhabditis elegansFrom_analysisTreeFam
WBGene00021635Caenorhabditis elegansFrom_analysisTreeFam
WBGene00021745Caenorhabditis elegansFrom_analysisTreeFam
WBGene00034210Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00179585Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00155867Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00146827Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00125246Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160030Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00154546Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00150969Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00149052Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00153659Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145178Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145179Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00142562Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00125977Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00132909Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00127889Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00137154Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00178261Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00248125Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00114883Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g7045Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2291Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g730Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g348Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12697Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27473Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7543Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2978Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4659Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10177Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00215.g7198Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00875.g14695Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08193.g21354Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vab-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4511Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15081Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00541.g12614Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00541.g12615Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06765Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_06766Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004460Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11900Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16329Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20228920Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4270Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00285349Trichuris murisFrom_analysisWormBase-Compara
Paralog (79)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ephrin receptor activity. Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Is an ortholog of C. elegans vab-1. In C. elegans, vab-1 is involved in several processes, including cell development; embryonic morphogenesis; and regulation of axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE17286
Corresponding_transcriptCRE17286.1
Other_sequence (13)
Experimental_infoExpr_patternExpr1104084
Microarray_resultsGPL14146_CRE17286_2373-2432_0.770_107_C
GPL14146_CRE17286_2409-2468_0.809_41_B
GPL14146_CRE17286_2621-2680_0.864_10_A
MethodGene