WormBase Tree Display for Gene: WBGene00102288

WBGene00102288 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 4
    Name: Sequence_name: PPA12734
      Molecular_name: PPA12734
        PPA12734.1
        PP70847
      Other_name: GENEPREDICTION_SNAP300000069144
        GENEPREDICTION_SNAP300000069145
        GENEPREDICTION_SNAP300000069146
        UMM-S435-2.111 Person_evidence: WBPerson606
      Public_name: PPA12734
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:49 WBPerson4055 Event: Acquires_merge: WBGene00102289
        3 24 Nov 2017 09:46:49 WBPerson4055 Event: Acquires_merge: WBGene00102290
        4 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
      Acquires_merge: WBGene00102290
        WBGene00102289
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000032 3.39083 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 2.27434 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        3.39083 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        3.43219 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00179028
    Ortholog: WBGene00003387 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00012484 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
      WBGene00021846 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
      WBGene00026922 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00026924 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
      WBGene00029862 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
      WBGene00032799 Caenorhabditis briggsae From_analysis: OMA
      WBGene00057106 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00057107 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00128705 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00157575 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00160046 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00119788 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00159682 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00140414 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00137722 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00153737 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00156760 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00227067 Brugia malayi From_analysis: WormBase-Compara
      WBGene00176392 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237024 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g8986 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11668 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g765 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2474 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2963 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1737 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8318 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11880 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14049 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12857 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g17716 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g29804 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10792 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00089.g3997 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_10786.g22861 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mod-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6906 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00740.g15012 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17252 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000906 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14225 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17560 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10148700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g450 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00260715 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (13)
    Structured_description: Automated_description: Predicted to be located in membrane. Is an ortholog of C. elegans car-1; mod-5; and ztf-23. In C. elegans, mod-5 is involved in serotonin uptake. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA12734
    Corresponding_transcript: PPA12734.1
    Other_sequence (146)
  Experimental_info: Microarray_results (13)
    Expression_cluster: WBPaper00041207:PP_dauer_up
      WBPaper00041466:PP_germline-ablation_regulated
      WBPaper00041606:PP_S.marcescens_regulated
      WBPaper00041606:PP_X.nematophila_regulated
  Remark: [180319 gw3] The CGC name Ppa-ztf-23 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson4025
  Method: Gene