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WormBase Tree Display for Gene: WBGene00116813

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Name Class

WBGene00116813SMapS_parentSequencePPA_ChrI
IdentityVersion6
NameCGC_namePpa-dlg-1From_analysisInferred_from_orthology
Sequence_namePPA27259
Molecular_namePPA27259
PPA27259.1
PP72254
Other_nameGENEPREDICTION_SNAP300000084080
UMM-S207-18.2Person_evidenceWBPerson606
Public_namePpa-dlg-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:07WBPerson4055EventImportedfrom NGASP
218 Nov 2010 11:54:47WBPerson2970Name_changeCGC_namePpa-dlg-1
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:25WBPerson1983Name_changeCGC_namePpa-dlg-1
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-dlg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdlg
RNASeq_FPKMWBls:00000321.07499From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.07499From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
1.20467From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
2.53901From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00160686Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00035111Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00230534Brugia malayiFrom_analysisWormBase-Compara
WBGene00001006Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00124018Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00240189Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g11781Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g11865Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8774Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13300Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10548Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2521Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9076Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g136Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9463Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21649Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17653Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00024.g1481Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_22777.g26912Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dlg-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold626.g6622Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00154.g5787Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00499Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024430Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13229Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21202Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4213Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0238800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00051667Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g19081Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00259532Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263585Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285542Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: L27-1; SH3-like domain superfamily; L27_1; SH3 domain; L27 domain superfamily; Guanylate kinase/L-type calcium channel beta subunit; P-loop containing nucleoside triphosphate hydrolase; PDZ superfamily; Guanylate kinase; and PDZ domain. Is an ortholog of C. elegans dlg-1. In C. elegans, dlg-1 is involved in embryo development and zonula adherens assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA27259
Corresponding_transcriptPPA27259.1
Other_sequence (79)
Experimental_infoMicroarray_resultsGPL14372_Probes_20452
GPL14372_Probes_20453
GPL14372_Probes_20454
GPL14372_Probes_20455
GPL14372_Probes_20456
GPL14372_Probes_72605
GPL14372_Probes_72606
GPL14372_Probes_72607
Remark[190208 pad] The CGC name Ppa-dlg-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-dlg-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene