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WormBase Tree Display for Gene: WBGene00116910

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Name Class

WBGene00116910SMapS_parentSequencePPA_ChrI
IdentityVersion9
NameCGC_namePpa-myo-2From_analysisInferred_from_orthology
Sequence_namePPA27356
Molecular_namePPA27356
PPA27356.1
PP66618
Other_nameGENEPREDICTION_SNAP300000084177
GENEPREDICTION_SNAP300000084178
GENEPREDICTION_SNAP300000084179
GENEPREDICTION_SNAP300000084180
UMM-S207-23.15Person_evidenceWBPerson606
Public_namePpa-myo-2
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:07WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-myo-2
324 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00116911
424 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00116912
524 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00116913
620 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
708 May 2019 10:09:26WBPerson1983Name_changeCGC_namePpa-myo-2
828 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
928 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-myo-2
Acquires_mergeWBGene00116913
WBGene00116911
WBGene00116912
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmyo
RNASeq_FPKMWBls:00000322.4603From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010112.1056From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
2.4603From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
4.8553From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
GO_annotation00185620
00185621
00185622
00185623
00185624
00185625
OrthologWBGene00177645Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00162863Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00023596Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00003514Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00120864Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g2777Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5907Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16706Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17765Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4416Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5611Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11427Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12150Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15621Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12155Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00085.g3880Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10493.g22684Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13674.g24324Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15171.g24948Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15865.g25190Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16670.g25437Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_17016.g25559Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_23697.g27061Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g25065Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18784Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00076.g3494Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03397Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024983Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11344Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0224100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00051137Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g20271Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00255842Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291504Trichuris murisFrom_analysisWormBase-Compara
WBGene00296307Trichuris murisFrom_analysisWormBase-Compara
Paralog (20)
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be involved in transmembrane transport. Predicted to be part of myosin complex. Is an ortholog of C. elegans myo-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA27356
Corresponding_transcriptPPA27356.1
Other_sequence (46)
Experimental_infoMicroarray_results (17)
Expression_clusterWBPaper00041207:PP_dauer_down
WBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
WBPaper00041606:PP_S.marcescens_regulated
WBPaper00041606:PP_X.nematophila_regulated
Remark[180319 gw3] The CGC name Ppa-myo-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
[210528 pad] The CGC name Ppa-myo-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene