WormBase Tree Display for Gene: WBGene00124420

WBGene00124420 SMap: S_parent: Sequence: Cjap.Contig18154
  Identity: Version: 3
    Name: CGC_name: Cjp-ifd-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA05216
      Molecular_name: CJA05216
        CJA05216.1
        JA06945
      Other_name: Cjp-ifd-2 From_analysis: Inferred_from_orthology
      Public_name: Cjp-ifd-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-ifd-2
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cjp-ifd-1
                Other_name: Cjp-ifd-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ifd
    RNASeq_FPKM: WBls:0000004 93.2535 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 37.5771 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 36.0235 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        41.3013 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        46.5791 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 10.2954 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        10.5147 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        10.7438 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        10.973 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        12.1867 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        12.4713 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        13.9999 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        6.86466 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        7.19086 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        8.16223 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 12.1867 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        22.7536 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog: WBGene00002057 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00002058 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00035722 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00060227 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00070608 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153520 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g3501 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g658 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13399 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20760 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11475 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g699 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18685 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9816 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9878 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00751.g13866 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ifd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10938 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10939 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00049.g2539 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02098 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025229 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_025230 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_X0173100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00070609 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrX_pilon.g19647 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (11)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Lamin tail domain; Lamin tail domain superfamily; Lamin Tail Domain; Intermediate filament, rod domain; and Intermediate filament protein. Is an ortholog of C. elegans ifd-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA05216
    Corresponding_transcript: CJA05216.1
    Other_sequence: CR05859
      CRC09035_1
  Experimental_info: Expr_pattern: Expr1071497
      Expr1079403
    Microarray_results: GPL14145_CJA05216_1113-1172_0.926_3_A
      GPL14145_CJA05216_714-773_0.911_11_C
      GPL14145_CJA05216_900-959_0.428_218_B
      GPL14145_CJA22233_333-392_0.930_1_A
  Method: Gene